RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 HSBP1L1C9JCN9 74 aa9.36□□□□□ -0.91
CHD3-201ENST00000330494 ACOT8O14734 319 aa9.36□□□□□ -0.91
CHD3-201ENST00000330494 BDKRB2P30411 391 aa9.36□□□□□ -0.91
CHD3-201ENST00000330494 GABRA5P31644 462 aa9.36□□□□□ -0.91
CHD3-201ENST00000330494 RRADP55042 308 aa9.36□□□□□ -0.91
CHD3-201ENST00000330494 GPLD1P80108 840 aa9.36□□□□□ -0.91
CHD3-201ENST00000330494 SF3B4Q15427 424 aaKnown RBP eCLIP9.36□□□□□ -0.911e-6■■■□□ 17.6
CHD3-201ENST00000330494 PRSS45Q7RTY3 260 aa9.36□□□□□ -0.91
CHD3-201ENST00000330494 ST8SIA2Q92186 375 aa9.36□□□□□ -0.91
CHD3-201ENST00000330494 PDCD1LG2Q9BQ51 273 aa9.36□□□□□ -0.91
CHD3-201ENST00000330494 LANCL2Q9NS86 450 aa9.36□□□□□ -0.91
CHD3-201ENST00000330494 GNG13Q9P2W3 67 aa9.36□□□□□ -0.91
CHD3-201ENST00000330494 PSORS1C1Q9UIG5 152 aa9.36□□□□□ -0.91
CHD3-201ENST00000330494 OSGIN1Q9UJX0 560 aa9.36□□□□□ -0.91
CHD3-201ENST00000330494 YBX2Q9Y2T7 364 aaKnown RBP9.36□□□□□ -0.91
CHD3-201ENST00000330494 COL11A1P12107 1806 aaPredicted RBP9.36□□□□□ -0.91
CHD3-201ENST00000330494 EFSO43281 561 aa9.36□□□□□ -0.91
CHD3-201ENST00000330494 HLA-AP01891 365 aaKnown RBP9.36□□□□□ -0.91
CHD3-201ENST00000330494 CLEC2LP0C7M8 214 aa9.36□□□□□ -0.91
CHD3-201ENST00000330494 DUSP2Q05923 314 aa9.36□□□□□ -0.91
CHD3-201ENST00000330494 GOT1L1Q8NHS2 421 aaPredicted RBP9.36□□□□□ -0.91
CHD3-201ENST00000330494 PAQR8Q8TEZ7 354 aa9.36□□□□□ -0.91
CHD3-201ENST00000330494 CCDC74BQ96LY2 380 aa9.36□□□□□ -0.91
CHD3-201ENST00000330494 OR11A1Q9GZK7 315 aa9.36□□□□□ -0.91
CHD3-201ENST00000330494 RNF167Q9H6Y7 350 aa9.36□□□□□ -0.91
CHD3-201ENST00000330494 H3BUI4 141 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 SCGB1D1O95968 90 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 ZDHHC11BP0C7U3 371 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 ILKQ13418 452 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 SPRED1Q7Z699 444 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 PLPP6Q8IY26 295 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 OR4M1Q8NGD0 313 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 ZBTB8AQ96BR9 441 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 RANGRFQ9HD47 186 aaPredicted RBP9.35□□□□□ -0.91
CHD3-201ENST00000330494 EMC7Q9NPA0 242 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 NPFFR2Q9Y5X5 522 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 PLXNB2O15031 1838 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 ARFGEF1Q9Y6D6 1849 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 ANKRD33BA6NCL7 494 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 ZNF587BE7ETH6 402 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 CCL7P80098 99 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 OR52W1Q6IF63 320 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 MRPL41Q8IXM3 137 aaKnown RBP9.35□□□□□ -0.91
CHD3-201ENST00000330494 OR4Q3Q8NH05 313 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 SDF2Q99470 211 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 ZNF416Q9BWM5 594 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 TXNL4BQ9NX01 149 aaKnown RBP9.35□□□□□ -0.91
CHD3-201ENST00000330494 CGGBP1Q9UFW8 167 aaPredicted RBP9.35□□□□□ -0.91
CHD3-201ENST00000330494 SERGEFQ9UGK8 458 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 MEIOCA2RUB1 952 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 IDSB3KWA1 339 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 TNFRSF10AO00220 468 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 TXNDC12O95881 172 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 SLC14A1Q13336 389 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 C1orf140Q5VVS0 124 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 RPL22L1Q6P5R6 122 aaKnown RBP9.35□□□□□ -0.91
CHD3-201ENST00000330494 ZNF813Q6ZN06 617 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 TRILQ7L0X0 811 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 SECTM1Q8WVN6 248 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 MUTYHQ9UIF7 546 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 MMACHCQ9Y4U1 282 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 KCNK2O95069 426 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 TNFSF15O95150 251 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 IFNA1P01562 189 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 EDDM3AQ14507 147 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 SAXO2Q658L1 398 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 PGM2L1Q6PCE3 622 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 FNDC9Q8TBE3 224 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 SNX18Q96RF0 628 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 METTL9Q9H1A3 318 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 TP53TG5Q9Y2B4 290 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 MRPS28Q9Y2Q9 187 aaKnown RBP9.35□□□□□ -0.91
CHD3-201ENST00000330494 PCDHGA5Q9Y5G8 931 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 CEBPZOSA8MTT3 80 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 BLVRBP30043 206 aaPredicted RBP9.35□□□□□ -0.91
CHD3-201ENST00000330494 EMDP50402 254 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 ETV1P50549 477 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 GABREP78334 506 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 DPTQ07507 201 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 LRRC28Q86X40 367 aaPredicted RBP9.35□□□□□ -0.91
CHD3-201ENST00000330494 STEAP2Q8NFT2 490 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 SEC22AQ96IW7 307 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 SLC25A37Q9NYZ2 338 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 RRP8O43159 456 aaKnown RBP9.35□□□□□ -0.91
CHD3-201ENST00000330494 OR2T7P0C7T2 308 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 TMEM11P17152 192 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 OMGP23515 440 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 TBCEQ15813 527 aaPredicted RBP9.35□□□□□ -0.91
CHD3-201ENST00000330494 FAM109BQ6ICB4 259 aaPredicted RBP9.35□□□□□ -0.91
CHD3-201ENST00000330494 OR2T27Q8NH04 317 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 VRK1Q99986 396 aaPredicted RBP9.35□□□□□ -0.91
CHD3-201ENST00000330494 OR52A5Q9H2C5 316 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 LYRM4Q9HD34 91 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 DECR2Q9NUI1 292 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 PIGLQ9Y2B2 252 aa9.35□□□□□ -0.91
CHD3-201ENST00000330494 ZNFX1Q9P2E3 1918 aaKnown RBP9.35□□□□□ -0.91
CHD3-201ENST00000330494 COL4A1P02462 1669 aa9.34□□□□□ -0.91
CHD3-201ENST00000330494 A0A096LPE4 126 aa9.34□□□□□ -0.91
CHD3-201ENST00000330494 A0A1W2PPZ6 126 aa9.34□□□□□ -0.91
CHD3-201ENST00000330494 TMEM212A6NML5 194 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms