RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 PLAGL1Q9UM63 463 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 NTNG1Q9Y2I2 539 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 CTNSO60931 367 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 KHDRBS3O75525 346 aaKnown RBP9.41□□□□□ -0.9
UPF3B-201ENST00000276201 SRMP19623 302 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 MPGP29372 298 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 SLC6A6P31641 620 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 HOXA1P49639 335 aaPredicted RBP9.41□□□□□ -0.9
UPF3B-201ENST00000276201 UBE2IP63279 158 aaKnown RBP9.41□□□□□ -0.9
UPF3B-201ENST00000276201 ISXQ2M1V0 245 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 LINC00303Q3SY05 128 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 AMZ1Q400G9 498 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 ZNF660Q6AZW8 331 aaPredicted RBP9.41□□□□□ -0.9
UPF3B-201ENST00000276201 UQCC3Q6UW78 93 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 HMGN2P46Q86SG4 172 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 ZNF761Q86XN6 746 aaPredicted RBP9.41□□□□□ -0.9
UPF3B-201ENST00000276201 NPAS1Q99742 590 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 ZNF350Q9GZX5 532 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 CDCP1Q9H5V8 836 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 MYOZ1Q9NP98 299 aaPredicted RBP9.41□□□□□ -0.9
UPF3B-201ENST00000276201 NKIRAS2Q9NYR9 191 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 TAS2R10Q9NYW0 307 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 ZNF69Q9UC07 566 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 NDRG3Q9UGV2 375 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 ATG4BQ9Y4P1 393 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 FRYQ5TBA9 3013 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 IGKV1-8A0A0C4DH67 115 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 KCNJ13O60928 360 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 ERAL1O75616 437 aaKnown RBP9.4□□□□□ -0.9
UPF3B-201ENST00000276201 POU3F2P20265 443 aaPredicted RBP9.4□□□□□ -0.9
UPF3B-201ENST00000276201 MC3RP41968 323 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 HHEXQ03014 270 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 RBMS2Q15434 407 aaKnown RBP9.4□□□□□ -0.9
UPF3B-201ENST00000276201 OR1Q1Q15612 314 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 RNASE12Q5GAN4 147 aaKnown RBP9.4□□□□□ -0.9
UPF3B-201ENST00000276201 PWWP2BQ6NUJ5 590 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 THSD4Q6ZMP0 1018 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 WDR88Q6ZMY6 472 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 ZNF619Q8N2I2 560 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 ZNF454Q8N9F8 522 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 OR2L8Q8NGY9 312 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 OR14A16Q8NHC5 309 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 COQ8AQ8NI60 647 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 BPIFA2Q96DR5 249 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 PEX11GQ96HA9 241 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 CNN2Q99439 309 aaKnown RBP9.4□□□□□ -0.9
UPF3B-201ENST00000276201 SLC38A3Q99624 504 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 ZNF426Q9BUY5 554 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 CHIAQ9BZP6 476 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 ENKD1Q9H0I2 346 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 C1orf198Q9H425 327 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 SLC6A20Q9NP91 592 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 POLE3Q9NRF9 147 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 CPNE7Q9UBL6 633 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 PURGQ9UJV8 347 aaKnown RBP9.4□□□□□ -0.9
UPF3B-201ENST00000276201 ATXN7L1Q9ULK2 861 aaPredicted RBP9.4□□□□□ -0.9
UPF3B-201ENST00000276201 MED31Q9Y3C7 131 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 AK6Q9Y3D8 172 aaKnown RBP9.4□□□□□ -0.9
UPF3B-201ENST00000276201 WDR45Q9Y484 360 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 ZNF780BQ9Y6R6 833 aa9.4□□□□□ -0.9
UPF3B-201ENST00000276201 A0A0B4J203 849 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 OR5K4A6NMS3 321 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 OR52A4PA6NMU1 304 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 C1QTNF9BB2RNN3 333 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 F5H5P2 479 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 FCMRO60667 390 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 PRAMEF2O60811 474 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 GLSO94925 669 aaPredicted RBP9.39□□□□□ -0.91
UPF3B-201ENST00000276201 AK1P00568 194 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 PROS1P07225 676 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 C1QTNF9P0C862 333 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 MGMTP16455 207 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 HTR2AP28223 471 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 BCL6P41182 706 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 GPR3P46089 330 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 LRRN1Q6UXK5 716 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 ESPNLQ6ZVH7 1005 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 SSX6Q7RTT6 188 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 TMPRSS9Q7Z410 1059 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 TMEM17Q86X19 198 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 OR2L13Q8N349 312 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 LINC01555Q8NAE3 123 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 PXT1Q8NFP0 134 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 OR2AK2Q8NG84 335 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 OR13C5Q8NGS8 318 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 PHYHIPLQ96FC7 376 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 C10orf90Q96M02 699 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 ZNF559Q9BR84 538 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 KLHL31Q9H511 634 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 BEX1Q9HBH7 125 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 RASL12Q9NYN1 266 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 ATPIF1Q9UII2 106 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 V9GY05 133 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 UNC13CQ8NB66 2214 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 IGHV1OR21-1A0A087WYE8 117 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 A0A0D9SG52 128 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 RFPL4AA6NLU0 287 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 RFPL4AL1F8VTS6 287 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 H7C417 338 aa9.39□□□□□ -0.91
UPF3B-201ENST00000276201 PIN1P1O15428 100 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms