RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 TOMM20Q15388 145 aa11.52□□□□□ -0.56
LIG1-201ENST00000263274 MED25Q71SY5 747 aa11.52□□□□□ -0.56
LIG1-201ENST00000263274 MCATQ8IVS2 390 aaKnown RBP11.52□□□□□ -0.56
LIG1-201ENST00000263274 GFI1Q99684 422 aa11.52□□□□□ -0.56
LIG1-201ENST00000263274 URB1O60287 2271 aaKnown RBP11.52□□□□□ -0.57
LIG1-201ENST00000263274 XKRYO14609 159 aa11.52□□□□□ -0.57
LIG1-201ENST00000263274 HCRTR2O43614 444 aa11.52□□□□□ -0.57
LIG1-201ENST00000263274 TNFP01375 233 aa11.52□□□□□ -0.57
LIG1-201ENST00000263274 SPARCP09486 303 aa11.52□□□□□ -0.57
LIG1-201ENST00000263274 CXCL2P19875 107 aa11.52□□□□□ -0.57
LIG1-201ENST00000263274 FAUP35544 74 aaKnown RBP11.52□□□□□ -0.57
LIG1-201ENST00000263274 CBX5P45973 191 aa11.52□□□□□ -0.57
LIG1-201ENST00000263274 HAAOP46952 286 aa11.52□□□□□ -0.57
LIG1-201ENST00000263274 ARHGDIBP52566 201 aa11.52□□□□□ -0.57
LIG1-201ENST00000263274 SHEQ5VZ18 495 aa11.52□□□□□ -0.57
LIG1-201ENST00000263274 NPSR1Q6W5P4 371 aa11.52□□□□□ -0.57
LIG1-201ENST00000263274 ZNF227Q86WZ6 799 aa11.52□□□□□ -0.57
LIG1-201ENST00000263274 OR6V1Q8N148 313 aa11.52□□□□□ -0.57
LIG1-201ENST00000263274 BCORP1Q8N888 145 aa11.52□□□□□ -0.57
LIG1-201ENST00000263274 TEX19Q8NA77 164 aa11.52□□□□□ -0.57
LIG1-201ENST00000263274 PLPP7Q8NBV4 271 aa11.52□□□□□ -0.57
LIG1-201ENST00000263274 OR4D10Q8NGI6 311 aa11.52□□□□□ -0.57
LIG1-201ENST00000263274 OR51S1Q8NGJ8 323 aa11.52□□□□□ -0.57
LIG1-201ENST00000263274 OR10A5Q9H207 317 aa11.52□□□□□ -0.57
LIG1-201ENST00000263274 MTIF3Q9H2K0 278 aaKnown RBP11.52□□□□□ -0.57
LIG1-201ENST00000263274 IFT46Q9NQC8 304 aa11.52□□□□□ -0.57
LIG1-201ENST00000263274 FBXL2Q9UKC9 423 aa11.52□□□□□ -0.57
LIG1-201ENST00000263274 A0A087WUJ7 227 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 DCDC2BA2VCK2 349 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 OIP5O43482 229 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 DPP4P27487 766 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 AKT2P31751 481 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 MELKQ14680 651 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 BEX5Q5H9J7 111 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 FAM174AQ8TBP5 190 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 DUSP19Q8WTR2 217 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 RGP1Q92546 391 aaPredicted RBP11.51□□□□□ -0.57
LIG1-201ENST00000263274 C3orf49Q96BT1 292 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 CXorf58Q96LI9 332 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 G6PC3Q9BUM1 346 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 PRDM9Q9NQV7 894 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 FRRS1LQ9P0K9 344 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 SERTAD3Q9UJW9 196 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 POMT2Q9UKY4 750 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 SLC22A13Q9Y226 551 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 SCDO00767 359 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 PRAF2O60831 178 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 RENP00797 406 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 NUP62P37198 522 aaPredicted RBP11.51□□□□□ -0.57
LIG1-201ENST00000263274 MAP3K8P41279 467 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 RBM34P42696 430 aaKnown RBP11.51□□□□□ -0.57
LIG1-201ENST00000263274 CAPZA2P47755 286 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 TPMTP51580 245 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 CLLU1Q5K131 121 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 PM20D2Q8IYS1 436 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 KDM8Q8N371 416 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 PTTG3PQ9NZH4 202 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 PFDN2Q9UHV9 154 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 HRH3Q9Y5N1 445 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 CD14P08571 375 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 ACSM4P0C7M7 580 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 ADRA2CP18825 462 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 PBX2P40425 430 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 PRPS1P60891 318 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 NDUFAF7Q7L592 441 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 LINC00518Q8N0U6 118 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 FLVCR1-AS1Q8TAF5 88 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 ATOH1Q92858 354 aaPredicted RBP11.51□□□□□ -0.57
LIG1-201ENST00000263274 PDCD10Q9BUL8 212 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 FANCFQ9NPI8 374 aa11.51□□□□□ -0.57
LIG1-201ENST00000263274 MRM2Q9UI43 246 aaKnown RBP11.51□□□□□ -0.57
LIG1-201ENST00000263274 TCRBV21S2A2A0A5A6 115 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 SIGLEC5O15389 551 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 PRAMEF2O60811 474 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 RP2O75695 350 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 SLC25A12O75746 678 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 HOXD4P09016 255 aaPredicted RBP11.5□□□□□ -0.57
LIG1-201ENST00000263274 EFNB2P52799 333 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 SORDQ00796 357 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 SIGLEC14Q08ET2 396 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 CD226Q15762 336 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 NKPD1Q17RQ9 610 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 ARHGAP40Q5TG30 622 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 C1QL3Q5VWW1 255 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 OR10K2Q6IF99 312 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 GLDNQ6ZMI3 551 aaPredicted RBP11.5□□□□□ -0.57
LIG1-201ENST00000263274 DND1Q8IYX4 353 aaKnown RBP11.5□□□□□ -0.57
LIG1-201ENST00000263274 JAGN1Q8N5M9 183 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 RELL2Q8NC24 303 aaPredicted RBP11.5□□□□□ -0.57
LIG1-201ENST00000263274 OR4C16Q8NGL9 310 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 OR10Z1Q8NGY1 313 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 HAVCR2Q8TDQ0 301 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 HGDQ93099 445 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 MRGPRX1Q96LB2 322 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 LINC00052Q96N35 136 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 MAP3K3Q99759 626 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 MICU1Q9BPX6 476 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 SDHAF2Q9NX18 166 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 KCNG2Q9UJ96 466 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 TCRBV16S1A1N1A0A5B0 115 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms