RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	POU4F3	Q15319	338 aa		10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	KLHL12	Q53G59	568 aa		10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	LCN1P1	Q5VSP4	162 aa		10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	RNLS	Q5VYX0	342 aa		10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	TRIL	Q7L0X0	811 aa		10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	UBQLNL	Q8IYU4	475 aa		10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	RBMXL3	Q8N7X1	1067 aa	Known RBP	10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	OR52I1	Q8NGK6	324 aa		10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	OR2T4	Q8NH00	348 aa		10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	OR10D3	Q8NH80	312 aa		10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	C9orf43	Q8TAL5	461 aa	Predicted RBP	10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	ASB10	Q8WXI3	467 aa		10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	CPNE4	Q96A23	557 aa	Predicted RBP	10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	LGALS12	Q96DT0	336 aa		10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	ABHD17A	Q96GS6	310 aa		10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	CRELD1	Q96HD1	420 aa		10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	SF3B5	Q9BWJ5	86 aa	Known RBP	10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	SRXN1	Q9BYN0	137 aa		10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	OR51V1	Q9H2C8	321 aa		10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	EXO5	Q9H790	373 aa		10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	PAQR5	Q9NXK6	330 aa	Predicted RBP	10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	VSX1	Q9NZR4	365 aa	Predicted RBP	10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	DIMT1	Q9UNQ2	313 aa	Known RBP	10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	MOK	Q9UQ07	419 aa		10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	ANKRD11	Q6UB99	2663 aa	Predicted RBP	10.52	□□□□□ -0.73
CLN6-223	ENST00000637823	GTF3C1	Q12789	2109 aa		10.52	□□□□□ -0.73
CLN6-223	ENST00000637823		A0A1B0GVC2	190 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	CCDC182	A6NF36	153 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	C1QTNF9B	B2RNN3	333 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823		H0YC42	278 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	TAF4	O00268	1085 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	C1QTNF9	P0C862	333 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	CLU	P10909	449 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	CPN1	P15169	458 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	SPI1	P17947	270 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	PCMT1	P22061	227 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	C21orf33	P30042	268 aa	Predicted RBP	10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	ATP6V1E1	P36543	226 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	EIF1AX	P47813	144 aa	Known RBP	10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	SLC16A1	P53985	500 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	RPS7	P62081	194 aa	Known RBP	10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	CXADR	P78310	365 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	POU4F2	Q12837	409 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	IRF3	Q14653	427 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	XAF1	Q6GPH4	301 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	UNQ6494/PRO21346	Q6UXR6	183 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	GPAT4	Q86UL3	456 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	EXD3	Q8N9H8	876 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	OR9Q1	Q8NGQ5	310 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	EXTL1	Q92935	676 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	TXNDC15	Q96J42	360 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	ADAD1	Q96M93	576 aa	Known RBP	10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	UCN2	Q96RP3	112 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	SRA1	Q9HD15	236 aa	Known RBP	10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	RPRD1B	Q9NQG5	326 aa	Known RBP	10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	ASB6	Q9NWX5	421 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	TNFRSF10D	Q9UBN6	386 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	B3GNT3	Q9Y2A9	372 aa		10.51	□□□□□ -0.73
CLN6-223	ENST00000637823	IGHV3-15	A0A0B4J1V0	119 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	SLC22A23	A1A5C7	686 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	DPPA5	A6NC42	116 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823		A6NHS1	94 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	ZNF726	A6NNF4	738 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	NPIPA2	E9PIF3	369 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	NPIPA3	F8WFD2	350 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823		K7EM74	188 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	SMAD9	O15198	467 aa	Known RBP	10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	TRAF3IP2	O43734	574 aa	Predicted RBP	10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	RAMP1	O60894	148 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	TRMU	O75648	421 aa	Known RBP	10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	GLCE	O94923	617 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	SYNGR4	O95473	234 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	GYPB	P06028	91 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	GSTT1	P30711	240 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	MAP2K4	P45985	399 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	CENPA	P49450	140 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	BID	P55957	195 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	SRY	Q05066	204 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	GGTLC2	Q14390	218 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	MELK	Q14680	651 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	SLC17A1	Q14916	467 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	NEDD8	Q15843	81 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	INA	Q16352	499 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	PLEKHN1	Q494U1	663 aa	Predicted RBP	10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	EEF1A1P5	Q5VTE0	462 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	GTF2IRD2B	Q6EKJ0	949 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	B3GNT6	Q6ZMB0	384 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	CREB3L2	Q70SY1	520 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	GTF2IRD2	Q86UP8	949 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	ZBTB46	Q86UZ6	589 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	PM20D2	Q8IYS1	436 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	GHDC	Q8N2G8	530 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	OR9K2	Q8NGE7	335 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	OR6X1	Q8NH79	312 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	ZPLD1	Q8TCW7	415 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	FAR1	Q8WVX9	515 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	FCGR1B	Q92637	280 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	KISS1R	Q969F8	398 aa	Predicted RBP	10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	SLC25A44	Q96H78	314 aa	Predicted RBP	10.5	□□□□□ -0.73

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