RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 OPALINQ96PE5 141 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 TSC22D3Q99576 134 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 NPAS1Q99742 590 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 ARHGAP9Q9BRR9 750 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 SF3B5Q9BWJ5 86 aaKnown RBP9.49□□□□□ -0.89
CLN3-248ENST00000636355 OR51V1Q9H2C8 321 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 MED20Q9H944 212 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 TRIM36Q9NQ86 728 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 RPRD1BQ9NQG5 326 aaKnown RBP9.49□□□□□ -0.89
CLN3-248ENST00000636355 DEPPQ9NTK1 212 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 PAQR5Q9NXK6 330 aaPredicted RBP9.49□□□□□ -0.89
CLN3-248ENST00000636355 KLHL13Q9P2N7 655 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 B3GAT1Q9P2W7 334 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 TMEM14AQ9Y6G1 99 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 ARPC4-TTLL3A0A0A6YYG9 625 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 DAPL1A0PJW8 107 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 TRABD2BA6NFA1 517 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 TRAF3IP2O43734 574 aaPredicted RBP9.48□□□□□ -0.89
CLN3-248ENST00000636355 GLSO94925 669 aaPredicted RBP9.48□□□□□ -0.89
CLN3-248ENST00000636355 WISP1O95388 367 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 BCL10O95999 233 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 MT-ND5P03915 603 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 HRGP04196 525 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 SP1P08047 785 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 ADRA2AP08913 450 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 IL11P20809 199 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 AHCYP23526 432 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 ACVR1BP36896 505 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 LIPAP38571 399 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 CDKN2AP42771 156 aaKnown RBP9.48□□□□□ -0.89
CLN3-248ENST00000636355 AGFG1P52594 562 aaKnown RBP9.48□□□□□ -0.89
CLN3-248ENST00000636355 SLC16A1P53985 500 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 GFRA1P56159 465 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 RAC3P60763 192 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 POU3F1Q03052 451 aaPredicted RBP9.48□□□□□ -0.89
CLN3-248ENST00000636355 GLO1Q04760 184 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 TPBGQ13641 420 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 PDSS1Q5T2R2 415 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 SLC25A25Q6KCM7 469 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 ZNF322Q6U7Q0 402 aaPredicted RBP9.48□□□□□ -0.89
CLN3-248ENST00000636355 SLC35D2Q76EJ3 337 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 SLC22A16Q86VW1 577 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 UEVLDQ8IX04 471 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 KBTBD8Q8NFY9 601 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 OR4F15Q8NGB8 312 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 TM9SF4Q92544 642 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 UFD1Q92890 307 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 SFXN2Q96NB2 322 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 SIGLEC12Q96PQ1 595 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 OR5M11Q96RB7 305 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 KCNK17Q96T54 332 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 ZNF649Q9BS31 505 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 NAA11Q9BSU3 229 aaPredicted RBP9.48□□□□□ -0.89
CLN3-248ENST00000636355 TTTY12Q9BZ98 90 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 YIPF3Q9GZM5 350 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 ZNF552Q9H707 407 aaPredicted RBP9.48□□□□□ -0.89
CLN3-248ENST00000636355 SIAEQ9HAT2 523 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 TIGARQ9NQ88 270 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 ASB6Q9NWX5 421 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 ANKRD10Q9NXR5 420 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 TAS2R16Q9NYV7 291 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 ZNF346Q9UL40 294 aaKnown RBP9.48□□□□□ -0.89
CLN3-248ENST00000636355 SSUH2Q9Y2M2 353 aa9.48□□□□□ -0.89
CLN3-248ENST00000636355 IGLV1-36A0A0B4J1U3 117 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 SLC22A23A1A5C7 686 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 SHISA8B8ZZ34 492 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 C11orf98E9PRG8 122 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 G3V3Y1 287 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 MS4A18H0YCH9 400 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 AIREO43918 545 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 AKR7A3O95154 331 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 IGHG1P01857 330 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 GAAP10253 952 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 GABRA5P31644 462 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 SFTPDP35247 375 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 TNFSF10P50591 281 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 OR2B6P58173 313 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 TUBA1BP68363 451 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 ARG2P78540 354 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 NFATC3Q12968 1075 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 TRAM1Q15629 374 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 BCL2A1Q16548 175 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 MS4A18Q3C1V0 323 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 TMEM176BQ3YBM2 270 aaPredicted RBP9.47□□□□□ -0.89
CLN3-248ENST00000636355 CDONQ4KMG0 1287 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 CCDC58Q4VC31 144 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 ABLIM2Q6H8Q1 611 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 SPINK14Q6IE38 97 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 TUBA1AQ71U36 451 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 SLC16A9Q7RTY1 509 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 KCTD20Q7Z5Y7 419 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 ATCAYQ86WG3 371 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 SLC35F2Q8IXU6 374 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 FAM109AQ8N4B1 249 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 NOXO1Q8NFA2 376 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 OR10H4Q8NGA5 316 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 OR6K6Q8NGW6 343 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 OR6X1Q8NH79 312 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 SMPDL3BQ92485 455 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 CPNE4Q96A23 557 aaPredicted RBP9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms