RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 GSG1Q2KHT4 349 aa15.19■□□□□ 0.02
SHKBP1-223ENST00000600552 TRMT5Q32P41 509 aaKnown RBP15.19■□□□□ 0.02
SHKBP1-223ENST00000600552 FAM91A1Q658Y4 838 aa15.19■□□□□ 0.02
SHKBP1-223ENST00000600552 NEU4Q8WWR8 484 aaPredicted RBP15.19■□□□□ 0.02
SHKBP1-223ENST00000600552 C7orf26Q96N11 449 aa15.19■□□□□ 0.02
SHKBP1-223ENST00000600552 MCHR1Q99705 422 aa15.19■□□□□ 0.02
SHKBP1-223ENST00000600552 SYT3Q9BQG1 590 aa15.19■□□□□ 0.02
SHKBP1-223ENST00000600552 C19orf24Q9BVV8 132 aa15.19■□□□□ 0.02
SHKBP1-223ENST00000600552 ULBP2Q9BZM5 246 aa15.19■□□□□ 0.02
SHKBP1-223ENST00000600552 NARFLQ9H6Q4 476 aa15.19■□□□□ 0.02
SHKBP1-223ENST00000600552 ANGPT4Q9Y264 503 aa15.19■□□□□ 0.02
SHKBP1-223ENST00000600552 CORINQ9Y5Q5 1042 aa15.19■□□□□ 0.02
SHKBP1-223ENST00000600552 A0A0B4J2E0 115 aa15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 A0A1B0GX12 115 aa15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 CPSF4LA6NMK7 179 aaKnown RBP15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 TPST2O60704 377 aa15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 TGDSO95455 350 aa15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 PATE4P0C8F1 98 aa15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 ADORA3P0DMS8 318 aa15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 SRP14P37108 136 aaKnown RBP15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 GIPRP48546 466 aa15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 CHN2P52757 468 aa15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 BIDP55957 195 aa15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 PUDPQ08623 228 aa15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 TRIP10Q15642 601 aa15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 CYP51A1Q16850 503 aa15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 CCDC36Q8IYA8 594 aa15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 ADPRHL1Q8NDY3 354 aa15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 HIPK4Q8NE63 616 aa15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 IL17RDQ8NFM7 739 aa15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 VANGL1Q8TAA9 524 aaPredicted RBP15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 CCDC28BQ9BUN5 200 aa15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 MRPL37Q9BZE1 423 aaKnown RBP15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 B3GNT2Q9NY97 397 aa15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 REV1Q9UBZ9 1251 aa15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 CORO2BQ9UQ03 480 aa15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 SPEF1Q9Y4P9 236 aa15.18■□□□□ 0.02
SHKBP1-223ENST00000600552 LOC102725191A0A1B0GVB3 256 aa15.17■□□□□ 0.02
SHKBP1-223ENST00000600552 KPNA4O00629 521 aaPredicted RBP15.17■□□□□ 0.02
SHKBP1-223ENST00000600552 PLPP3O14495 311 aa15.17■□□□□ 0.02
SHKBP1-223ENST00000600552 RAB36O95755 333 aa15.17■□□□□ 0.02
SHKBP1-223ENST00000600552 NR4A1P22736 598 aa15.17■□□□□ 0.02
SHKBP1-223ENST00000600552 ALDH3B1P43353 468 aa15.17■□□□□ 0.02
SHKBP1-223ENST00000600552 CSNK1A1P48729 337 aa15.17■□□□□ 0.02
SHKBP1-223ENST00000600552 RAB1AP62820 205 aa15.17■□□□□ 0.02
SHKBP1-223ENST00000600552 GALK2Q01415 458 aa15.17■□□□□ 0.02
SHKBP1-223ENST00000600552 RAB39AQ14964 217 aa15.17■□□□□ 0.02
SHKBP1-223ENST00000600552 BEND6Q5SZJ8 279 aaPredicted RBP15.17■□□□□ 0.02
SHKBP1-223ENST00000600552 AGBL2Q5U5Z8 902 aa15.17■□□□□ 0.02
SHKBP1-223ENST00000600552 MRPL39Q9NYK5 338 aaKnown RBP15.17■□□□□ 0.02
SHKBP1-223ENST00000600552 DUSP13Q9UII6 198 aa15.17■□□□□ 0.02
SHKBP1-223ENST00000600552 FBXO9Q9UK97 447 aaPredicted RBP15.17■□□□□ 0.02
SHKBP1-223ENST00000600552 HAX1O00165 279 aa15.16■□□□□ 0.02
SHKBP1-223ENST00000600552 LILRA1O75019 489 aa15.16■□□□□ 0.02
SHKBP1-223ENST00000600552 MFN2O95140 757 aa15.16■□□□□ 0.02
SHKBP1-223ENST00000600552 CH25HO95992 272 aa15.16■□□□□ 0.02
SHKBP1-223ENST00000600552 GPX2P18283 190 aa15.16■□□□□ 0.02
SHKBP1-223ENST00000600552 SEC24CP53992 1094 aa15.16■□□□□ 0.02
SHKBP1-223ENST00000600552 SQLEQ14534 574 aa15.16■□□□□ 0.02
SHKBP1-223ENST00000600552 MAD2L1BPQ15013 274 aaPredicted RBP15.16■□□□□ 0.02
SHKBP1-223ENST00000600552 MSMPQ1L6U9 139 aa15.16■□□□□ 0.02
SHKBP1-223ENST00000600552 ALKBH6Q3KRA9 238 aa15.16■□□□□ 0.02
SHKBP1-223ENST00000600552 LRP11Q86VZ4 500 aa15.16■□□□□ 0.02
SHKBP1-223ENST00000600552 SNX32Q86XE0 403 aa15.16■□□□□ 0.02
SHKBP1-223ENST00000600552 ZNF786Q8N393 782 aa15.16■□□□□ 0.02
SHKBP1-223ENST00000600552 SCAIQ8N9R8 606 aa15.16■□□□□ 0.02
SHKBP1-223ENST00000600552 OR5J2Q8NH18 312 aa15.16■□□□□ 0.02
SHKBP1-223ENST00000600552 SLC41A3Q96GZ6 507 aa15.16■□□□□ 0.02
SHKBP1-223ENST00000600552 FOXB1Q99853 325 aa15.16■□□□□ 0.02
SHKBP1-223ENST00000600552 CPPED1Q9BRF8 314 aaPredicted RBP15.16■□□□□ 0.02
SHKBP1-223ENST00000600552 OR51B6Q9H340 312 aa15.16■□□□□ 0.02
SHKBP1-223ENST00000600552 TMEM38AQ9H6F2 299 aa15.16■□□□□ 0.02
SHKBP1-223ENST00000600552 SLC52A3Q9NQ40 469 aa15.16■□□□□ 0.02
SHKBP1-223ENST00000600552 TRBV5-3A0A0A0MS03 114 aa15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 M0QX08 132 aa15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 RNF13O43567 381 aa15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 IGFBP1P08833 259 aaPredicted RBP15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 UMPSP11172 480 aa15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 GIFP27352 417 aa15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 LSP1P33241 339 aa15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 MRPL19P49406 292 aaKnown RBP15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 MTPNP58546 118 aa15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 SELPLGQ14242 412 aa15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 MELKQ14680 651 aa15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 RUNDC3AQ59EK9 446 aa15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 DLEU7Q6UYE1 221 aa15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 RINLQ6ZS11 566 aa15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 PXKQ7Z7A4 578 aa15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 DHDDSQ86SQ9 333 aa15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 RBM45Q8IUH3 476 aaKnown RBP15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 LINC01356Q8N9X3 169 aa15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 C11orf65Q8NCR3 313 aa15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 BHLHE22Q8NFJ8 381 aaPredicted RBP15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 OR6S1Q8NH40 331 aa15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 MRPL24Q96A35 216 aaKnown RBP15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 LRR1Q96L50 414 aa15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 TMEFF2Q9UIK5 374 aaPredicted RBP15.15■□□□□ 0.02
SHKBP1-223ENST00000600552 A0A1W2PPW3 197 aa15.14■□□□□ 0.01
SHKBP1-223ENST00000600552 M0R233 179 aa15.14■□□□□ 0.01
SHKBP1-223ENST00000600552 SYNGR3O43761 229 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms