RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 FREM3P0C091 2139 aa13.04□□□□□ -0.32
VRK3-217ENST00000599538 PMS2P1A4D2B8 440 aa13.04□□□□□ -0.32
VRK3-217ENST00000599538 PIN1P1O15428 100 aa13.04□□□□□ -0.32
VRK3-217ENST00000599538 UPK3AO75631 287 aa13.04□□□□□ -0.32
VRK3-217ENST00000599538 DKK1O94907 266 aa13.04□□□□□ -0.32
VRK3-217ENST00000599538 ZFPL1O95159 310 aa13.04□□□□□ -0.32
VRK3-217ENST00000599538 RENP00797 406 aa13.04□□□□□ -0.32
VRK3-217ENST00000599538 OPN1LWP04000 364 aa13.04□□□□□ -0.32
VRK3-217ENST00000599538 MYL9P24844 172 aa13.04□□□□□ -0.32
VRK3-217ENST00000599538 DUSP3P51452 185 aaPredicted RBP13.04□□□□□ -0.32
VRK3-217ENST00000599538 CLDN6P56747 220 aa13.04□□□□□ -0.32
VRK3-217ENST00000599538 RPL27P61353 136 aaKnown RBP13.04□□□□□ -0.32
VRK3-217ENST00000599538 LRRC69Q6ZNQ3 347 aa13.04□□□□□ -0.32
VRK3-217ENST00000599538 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.04□□□□□ -0.32
VRK3-217ENST00000599538 UBE2J2Q8N2K1 259 aa13.04□□□□□ -0.32
VRK3-217ENST00000599538 OR5M1Q8NGP8 315 aa13.04□□□□□ -0.32
VRK3-217ENST00000599538 STK35Q8TDR2 534 aa13.04□□□□□ -0.32
VRK3-217ENST00000599538 ELP5Q8TE02 316 aa13.04□□□□□ -0.32
VRK3-217ENST00000599538 DEFB126Q9BYW3 111 aa13.04□□□□□ -0.32
VRK3-217ENST00000599538 ARRDC1-AS1Q9H2J1 176 aa13.04□□□□□ -0.32
VRK3-217ENST00000599538 PTRH2Q9Y3E5 179 aaKnown RBP13.04□□□□□ -0.32
VRK3-217ENST00000599538 PRSS37A4D1T9 235 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 MS4A18H0YCH9 400 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 H3BML4 177 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 ABHD16AO95870 558 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 SYPP08247 313 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 MC2RQ01718 297 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 OR7A5Q15622 319 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 MS4A18Q3C1V0 323 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 CEP78Q5JTW2 689 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 LIPNQ5VXI9 398 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 RPS4Y2Q8TD47 263 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 TMEM234Q8WY98 164 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 TTC9Q92623 222 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 TXNIPQ9H3M7 391 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 C19orf25Q9UFG5 118 aaPredicted RBP13.03□□□□□ -0.32
VRK3-217ENST00000599538 KCNG2Q9UJ96 466 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 FBXL2Q9UKC9 423 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 B9D1Q9UPM9 204 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 COL27A1Q8IZC6 1860 aaPredicted RBP13.03□□□□□ -0.32
VRK3-217ENST00000599538 TMEM221A6NGB7 291 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 ACOD1A6NK06 481 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 M0R296 226 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 XKRYO14609 159 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 SLC16A7O60669 478 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 EIF4EP06730 217 aaKnown RBP13.03□□□□□ -0.32
VRK3-217ENST00000599538 KLK3P07288 261 aaPredicted RBP13.03□□□□□ -0.32
VRK3-217ENST00000599538 IMPDH2P12268 514 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 CTLA4P16410 223 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 NAGAP17050 411 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 ALOX5APP20292 161 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 CAPZA2P47755 286 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 HSF2Q03933 536 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 IL18Q14116 193 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 BPHLQ86WA6 291 aaPredicted RBP13.03□□□□□ -0.32
VRK3-217ENST00000599538 GDPD1Q8N9F7 314 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 POC1BQ8TC44 478 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 ST8SIA1Q92185 356 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 MAP6Q96JE9 813 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 METTL7AQ9H8H3 244 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 WDR54Q9H977 334 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 PPP4R1LQ9P1A2 415 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 FBXO4Q9UKT5 387 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 B3GALT1Q9Y5Z6 326 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 HS3ST3B1Q9Y662 390 aa13.03□□□□□ -0.32
VRK3-217ENST00000599538 LOC102723996A0A087X1L8 192 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 IGHV1-45A0A0A0MS14 117 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 FAM25AB3EWG3 89 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 FAM25CB3EWG5 89 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 FAM25GB3EWG6 89 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 PLA2G10O15496 165 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 ITGA10O75578 1167 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 OR6A2O95222 327 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 UCHL1P09936 223 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 FBXO45P0C2W1 286 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 RAB3BP20337 219 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 CCKBRP32239 447 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 MPLP40238 635 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 CASP3P42574 277 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 TRA2AQ13595 282 aaKnown RBP eCLIP13.02□□□□□ -0.33
VRK3-217ENST00000599538 MEP1BQ16820 701 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 CCDC58Q4VC31 144 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 CCDC157Q569K6 752 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 PRAMEF20Q5VT98 475 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 MZT2AQ6P582 158 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 TPRA1Q86W33 373 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 YIPF7Q8N8F6 280 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 TEX19Q8NA77 164 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 OR5H6Q8NGV6 325 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 THEM6Q8WUY1 208 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 C11orf54Q9H0W9 315 aaPredicted RBP13.02□□□□□ -0.33
VRK3-217ENST00000599538 NOX4Q9NPH5 578 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 MRPL22Q9NWU5 206 aaKnown RBP13.02□□□□□ -0.33
VRK3-217ENST00000599538 MRPL39Q9NYK5 338 aaKnown RBP13.02□□□□□ -0.33
VRK3-217ENST00000599538 FRRS1LQ9P0K9 344 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 GPN3Q9UHW5 284 aaPredicted RBP13.02□□□□□ -0.33
VRK3-217ENST00000599538 LAMP5Q9UJQ1 280 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 AK6Q9Y3D8 172 aaKnown RBP13.02□□□□□ -0.33
VRK3-217ENST00000599538 WIF1Q9Y5W5 379 aa13.02□□□□□ -0.33
VRK3-217ENST00000599538 CNTRLQ7Z7A1 2325 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms