RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 PRPS1P60891 318 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 VLDLRP98155 873 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 IL1RL1Q01638 556 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 FHL1Q13642 323 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 CEACAM16Q2WEN9 425 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 C3orf36Q3SXR2 165 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 ALKBH2Q6NS38 261 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 FKBP9P1Q75LS8 142 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 SLC35D2Q76EJ3 337 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 LRRC75A-AS1Q8N1F1 130 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 FAM169BQ8N8A8 192 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 TMEM54Q969K7 222 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 RADILQ96JH8 1075 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 CCL19Q99731 98 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 CRLF2Q9HC73 371 aa14.1□□□□□ -0.15
TRIM28-213ENST00000598355 A0A1W2PRQ8 180 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 CENPBD1B2RD01 187 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 ABCD4O14678 606 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 OR6A2O95222 327 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 WNT11O96014 354 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 IGKV3-15P01624 115 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 IGLV1-44P01699 117 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 PGA4P0DJD7 388 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 PGA3P0DJD8 388 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 UMPSP11172 480 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 RHCEP18577 417 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 TCN1P20061 433 aaPredicted RBP14.09□□□□□ -0.15
TRIM28-213ENST00000598355 CALB2P22676 271 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 ZNF83P51522 516 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 BIDP55957 195 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 PRKCDQ05655 676 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 SPOCK1Q08629 439 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 DGCR6Q14129 220 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 HIST3H3Q16695 136 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 KLHL17Q6TDP4 642 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 KLHL24Q6TFL4 600 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 RNF113BQ8IZP6 322 aaKnown RBP14.09□□□□□ -0.15
TRIM28-213ENST00000598355 ARHGAP24Q8N264 748 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 NEUROG1Q92886 237 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 FBXW5Q969U6 566 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 BPIFA2Q96DR5 249 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 NSL1Q96IY1 281 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 FUZQ9BT04 418 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 FNDC11Q9BVV2 318 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 GSX2Q9BZM3 304 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 NMNAT1Q9HAN9 279 aaPredicted RBP14.09□□□□□ -0.15
TRIM28-213ENST00000598355 MOV10Q9HCE1 1003 aaKnown RBP14.09□□□□□ -0.15
TRIM28-213ENST00000598355 RHCGQ9UBD6 479 aa14.09□□□□□ -0.15
TRIM28-213ENST00000598355 CLOCKO15516 846 aa14.08□□□□□ -0.16
TRIM28-213ENST00000598355 RNF13O43567 381 aa14.08□□□□□ -0.16
TRIM28-213ENST00000598355 IGHMP01871 453 aa14.08□□□□□ -0.16
TRIM28-213ENST00000598355 HIST1H2ABP04908 130 aa14.08□□□□□ -0.16
TRIM28-213ENST00000598355 IFI30P13284 250 aa14.08□□□□□ -0.16
TRIM28-213ENST00000598355 CDH2P19022 906 aaPredicted RBP14.08□□□□□ -0.16
TRIM28-213ENST00000598355 MAKP20794 623 aa14.08□□□□□ -0.16
TRIM28-213ENST00000598355 ZNF133P52736 654 aaPredicted RBP14.08□□□□□ -0.16
TRIM28-213ENST00000598355 ARF1P84077 181 aaKnown RBP14.08□□□□□ -0.16
TRIM28-213ENST00000598355 CAMK2DQ13557 499 aa14.08□□□□□ -0.16
TRIM28-213ENST00000598355 MELKQ14680 651 aa14.08□□□□□ -0.16
TRIM28-213ENST00000598355 PGGHGQ32M88 737 aa14.08□□□□□ -0.16
TRIM28-213ENST00000598355 ANKDD1AQ495B1 522 aa14.08□□□□□ -0.16
TRIM28-213ENST00000598355 MBOAT2Q6ZWT7 520 aa14.08□□□□□ -0.16
TRIM28-213ENST00000598355 HIST3H2AQ7L7L0 130 aa14.08□□□□□ -0.16
TRIM28-213ENST00000598355 DTX2Q86UW9 622 aa14.08□□□□□ -0.16
TRIM28-213ENST00000598355 NRMQ8IXM6 262 aa14.08□□□□□ -0.16
TRIM28-213ENST00000598355 LRRC75AQ8NAA5 344 aa14.08□□□□□ -0.16
TRIM28-213ENST00000598355 SLC7A13Q8TCU3 470 aa14.08□□□□□ -0.16
TRIM28-213ENST00000598355 ASB10Q8WXI3 467 aa14.08□□□□□ -0.16
TRIM28-213ENST00000598355 HIST1H2ACQ93077 130 aa14.08□□□□□ -0.16
TRIM28-213ENST00000598355 SLC25A44Q96H78 314 aaPredicted RBP14.08□□□□□ -0.16
TRIM28-213ENST00000598355 MRPL13Q9BYD1 178 aaKnown RBP14.08□□□□□ -0.16
TRIM28-213ENST00000598355 ULBP2Q9BZM5 246 aa14.08□□□□□ -0.16
TRIM28-213ENST00000598355 GRIP2Q9C0E4 1043 aa14.08□□□□□ -0.16
TRIM28-213ENST00000598355 ZNF701Q9NV72 531 aaPredicted RBP14.08□□□□□ -0.16
TRIM28-213ENST00000598355 ZNF503-AS2A6NEH8 195 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 ZNF726A6NNF4 738 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 B2RBV5 119 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 BLOC1S5-TXNDC5H3BN57 136 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 M0R1B8 84 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 M0R3G1 203 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 OVOL3O00110 214 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 GMNNO75496 209 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 SERPINI2O75830 405 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 AQP2P41181 271 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 LIMS1P48059 325 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 CSNK1A1P48729 337 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 SLC9A3P48764 834 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 CDH11P55287 796 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 ARMC4Q5T2S8 1044 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 CARD17Q5XLA6 110 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 B3GLCTQ6Y288 498 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 TMPRSS11FQ6ZWK6 438 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 CYP4Z1Q86W10 505 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 CCDC36Q8IYA8 594 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 NOXO1Q8NFA2 376 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 MOSPD2Q8NHP6 518 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 NMD3Q96D46 503 aaKnown RBP14.07□□□□□ -0.16
TRIM28-213ENST00000598355 PYURFQ96I23 114 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 NSMCE2Q96MF7 247 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 C1orf21Q9H246 121 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms