RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 TSPYL5Q86VY4 417 aaPredicted RBP10.8□□□□□ -0.68
TRIM28-212ENST00000597995 ARMC8Q8IUR7 673 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 ZCCHC24Q8N2G6 241 aaKnown RBP10.8□□□□□ -0.68
TRIM28-212ENST00000597995 GPR137CQ8N3F9 429 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 C11orf65Q8NCR3 313 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 ZFAND2BQ8WV99 257 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 DNAJA4Q8WW22 397 aaPredicted RBP10.8□□□□□ -0.68
TRIM28-212ENST00000597995 SLC38A4Q969I6 547 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 ZNF607Q96SK3 696 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 ARHGDIGQ99819 225 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 GPR35Q9HC97 309 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 RPS6KB2Q9UBS0 482 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 TESQ9UGI8 421 aaKnown RBP10.8□□□□□ -0.68
TRIM28-212ENST00000597995 METRNQ9UJH8 293 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 ANGPT4Q9Y264 503 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 CMAHPQ9Y471 501 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 A0A087WUJ7 227 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 SH3PXD2BA1X283 911 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 PRORSD1PA6NEY8 169 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 B4DSR2 109 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 M0R082 166 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 M0R3H8 397 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 OR2T1O43869 369 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 SERPINB7O75635 380 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 LYPD3O95274 346 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 THY1P04216 161 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 ADRA2AP08913 450 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 CD247P20963 164 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 CBLP22681 906 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 NR4A1P22736 598 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 GTF2E2P29084 291 aaKnown RBP10.79□□□□□ -0.68
TRIM28-212ENST00000597995 GRPRP30550 384 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 CDH12P55289 794 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 RGS8P57771 180 aaPredicted RBP10.79□□□□□ -0.68
TRIM28-212ENST00000597995 GUCY1A3Q02108 690 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 RUNX1T1Q06455 604 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 KLF10Q13118 480 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 DAG1Q14118 895 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 CYP51A1Q16850 503 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 CEACAM16Q2WEN9 425 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 RABL3Q5HYI8 236 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 FAM91A1Q658Y4 838 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 NANOGP8Q6NSW7 305 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 ULK3Q6PHR2 472 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 C5orf46Q6UWT4 87 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 NHLRC1Q6VVB1 395 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 C12orf54Q6X4T0 127 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 MDP1Q86V88 176 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 CALHM3Q86XJ0 350 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 RBM45Q8IUH3 476 aaKnown RBP10.79□□□□□ -0.68
TRIM28-212ENST00000597995 WDFY1Q8IWB7 410 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 CDK20Q8IZL9 346 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 PIK3C3Q8NEB9 887 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 OR6T1Q8NGN1 323 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 OR10A6Q8NH74 314 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 ZNF417Q8TAU3 575 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 TAMM41Q96BW9 452 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 ZNF587Q96SQ5 575 aaPredicted RBP10.79□□□□□ -0.68
TRIM28-212ENST00000597995 MS4A5Q9H3V2 200 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 NANOGQ9H9S0 305 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 NOX3Q9HBY0 568 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 CRLF2Q9HC73 371 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 SAR1AQ9NR31 198 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 KLHL14Q9P2G3 628 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 USP22Q9UPT9 525 aa10.79□□□□□ -0.68
TRIM28-212ENST00000597995 TRAV36DV7A0A075B6V5 113 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 ZNF503-AS2A6NEH8 195 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 ZNF99A8MXY4 864 aaPredicted RBP10.78□□□□□ -0.68
TRIM28-212ENST00000597995 LRRN3E7EW58 273 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 MS4A18H0YCH9 400 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 AIM2O14862 343 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 SYNGR3O43761 229 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 AKAP8O43823 692 aaKnown RBP10.78□□□□□ -0.68
TRIM28-212ENST00000597995 HPRP00739 348 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 BGLAPP02818 100 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 PCGF2P35227 344 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 ARFIP2P53365 341 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 NPRL3Q12980 569 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 SNTB2Q13425 540 aaKnown RBP10.78□□□□□ -0.68
TRIM28-212ENST00000597995 C1DQ13901 141 aaKnown RBP10.78□□□□□ -0.68
TRIM28-212ENST00000597995 TRIP10Q15642 601 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 TRMT5Q32P41 509 aaKnown RBP10.78□□□□□ -0.68
TRIM28-212ENST00000597995 MS4A18Q3C1V0 323 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 FAM69AQ5T7M9 428 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 LINC00114Q6XXX2 140 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 WDR88Q6ZMY6 472 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 GLCCI1Q86VQ1 547 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.78□□□□□ -0.68
TRIM28-212ENST00000597995 BHLHE22Q8NFJ8 381 aaPredicted RBP10.78□□□□□ -0.68
TRIM28-212ENST00000597995 MRPL24Q96A35 216 aaKnown RBP10.78□□□□□ -0.68
TRIM28-212ENST00000597995 LRRC58Q96CX6 371 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 ZNF837Q96EG3 531 aaPredicted RBP10.78□□□□□ -0.68
TRIM28-212ENST00000597995 SLC47A1Q96FL8 570 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 SLC41A3Q96GZ6 507 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 MOGAT1Q96PD6 335 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 OCEL1Q9H607 264 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 TMEM27Q9HBJ8 222 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 B3GNT2Q9NY97 397 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 REV1Q9UBZ9 1251 aa10.78□□□□□ -0.68
TRIM28-212ENST00000597995 SPEF1Q9Y4P9 236 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms