RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 ZNF726A6NNF4 738 aa13.72□□□□□ -0.21
LIG3-215ENST00000592690 WNT11O96014 354 aa13.72□□□□□ -0.21
LIG3-215ENST00000592690 F13BP05160 661 aa13.72□□□□□ -0.21
LIG3-215ENST00000592690 DANCRP0C864 163 aa13.72□□□□□ -0.21
LIG3-215ENST00000592690 IFI30P13284 250 aa13.72□□□□□ -0.21
LIG3-215ENST00000592690 IFNA8P32881 189 aa13.72□□□□□ -0.21
LIG3-215ENST00000592690 AQP2P41181 271 aa13.72□□□□□ -0.21
LIG3-215ENST00000592690 ADAM8P78325 824 aa13.72□□□□□ -0.21
LIG3-215ENST00000592690 TRAM2Q15035 370 aa13.72□□□□□ -0.21
LIG3-215ENST00000592690 SAMD4BQ5PRF9 694 aaKnown RBP13.72□□□□□ -0.21
LIG3-215ENST00000592690 C16orf89Q6UX73 402 aa13.72□□□□□ -0.21
LIG3-215ENST00000592690 B3GLCTQ6Y288 498 aa13.72□□□□□ -0.21
LIG3-215ENST00000592690 NRMQ8IXM6 262 aa13.72□□□□□ -0.21
LIG3-215ENST00000592690 OR6N1Q8NGY5 312 aa13.72□□□□□ -0.21
LIG3-215ENST00000592690 MOSPD2Q8NHP6 518 aa13.72□□□□□ -0.21
LIG3-215ENST00000592690 MAGEE2Q8TD90 523 aaPredicted RBP13.72□□□□□ -0.21
LIG3-215ENST00000592690 LIPHQ8WWY8 451 aa13.72□□□□□ -0.21
LIG3-215ENST00000592690 LRR1Q96L50 414 aa13.72□□□□□ -0.21
LIG3-215ENST00000592690 OBP2BQ9NPH6 170 aa13.72□□□□□ -0.21
LIG3-215ENST00000592690 SAMD4AQ9UPU9 718 aaKnown RBP13.72□□□□□ -0.21
LIG3-215ENST00000592690 LAMP3Q9UQV4 416 aa13.72□□□□□ -0.21
LIG3-215ENST00000592690 MAGED1Q9Y5V3 778 aaPredicted RBP13.72□□□□□ -0.21
LIG3-215ENST00000592690 ARPC4-TTLL3A0A0A6YYG9 625 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 ZNF503-AS2A6NEH8 195 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 ZNF99A8MXY4 864 aaPredicted RBP13.71□□□□□ -0.21
LIG3-215ENST00000592690 ARPC2O15144 300 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 GMNNO75496 209 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 SOD3P08294 240 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 TSPAN19P0C672 248 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 MAKP20794 623 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 CSNK1A1P48729 337 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 UBE2NP61088 152 aaKnown RBP13.71□□□□□ -0.21
LIG3-215ENST00000592690 NKX6-1P78426 367 aaPredicted RBP13.71□□□□□ -0.21
LIG3-215ENST00000592690 VLDLRP98155 873 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 PGGHGQ32M88 737 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 C1QTNF12Q5T7M4 302 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 SLC22A25Q6T423 547 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 TGIF2LYQ8IUE0 185 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 WFDC11Q8NEX6 87 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 OR6X1Q8NH79 312 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 SMAP2Q8WU79 429 aaPredicted RBP13.71□□□□□ -0.21
LIG3-215ENST00000592690 TMEM171Q8WVE6 324 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 TMEM54Q969K7 222 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 BPIFA2Q96DR5 249 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 PERPQ96FX8 193 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 NSL1Q96IY1 281 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 ADAD1Q96M93 576 aaKnown RBP13.71□□□□□ -0.21
LIG3-215ENST00000592690 ULBP2Q9BZM5 246 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 GORASP2Q9H8Y8 452 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 B3GAT2Q9NPZ5 323 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 NDE1Q9NXR1 346 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 CISD1Q9NZ45 108 aaKnown RBP13.71□□□□□ -0.21
LIG3-215ENST00000592690 MAGEL2Q9UJ55 1249 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 MGAT4BQ9UQ53 548 aa13.71□□□□□ -0.21
LIG3-215ENST00000592690 A0A087WUU8 490 aa13.7□□□□□ -0.22
LIG3-215ENST00000592690 IGHV1-18A0A0C4DH31 117 aa13.7□□□□□ -0.22
LIG3-215ENST00000592690 B2RBV5 119 aa13.7□□□□□ -0.22
LIG3-215ENST00000592690 E7EQL1 145 aa13.7□□□□□ -0.22
LIG3-215ENST00000592690 ATP6V1G2-DDX39BF2Z307 99 aa13.7□□□□□ -0.22
LIG3-215ENST00000592690 hCG_2039718K7EN88 272 aa13.7□□□□□ -0.22
LIG3-215ENST00000592690 DIRAS1O95057 198 aa13.7□□□□□ -0.22
LIG3-215ENST00000592690 PRKCDQ05655 676 aa13.7□□□□□ -0.22
LIG3-215ENST00000592690 Q5PR19 223 aa13.7□□□□□ -0.22
LIG3-215ENST00000592690 TBPL2Q6SJ96 375 aa13.7□□□□□ -0.22
LIG3-215ENST00000592690 ZNF730Q6ZMV8 503 aa13.7□□□□□ -0.22
LIG3-215ENST00000592690 CYP4Z1Q86W10 505 aa13.7□□□□□ -0.22
LIG3-215ENST00000592690 LRRC75A-AS1Q8N1F1 130 aa13.7□□□□□ -0.22
LIG3-215ENST00000592690 ASB10Q8WXI3 467 aa13.7□□□□□ -0.22
LIG3-215ENST00000592690 ACOT11Q8WXI4 607 aaPredicted RBP13.7□□□□□ -0.22
LIG3-215ENST00000592690 SLC25A44Q96H78 314 aaPredicted RBP13.7□□□□□ -0.22
LIG3-215ENST00000592690 C7orf34Q96L11 122 aa13.7□□□□□ -0.22
LIG3-215ENST00000592690 SEC61A2Q9H9S3 476 aa13.7□□□□□ -0.22
LIG3-215ENST00000592690 NMNAT1Q9HAN9 279 aaPredicted RBP13.7□□□□□ -0.22
LIG3-215ENST00000592690 INIPQ9NRY2 104 aa13.7□□□□□ -0.22
LIG3-215ENST00000592690 GLTPQ9NZD2 209 aa13.7□□□□□ -0.22
LIG3-215ENST00000592690 NDUFAF4Q9P032 175 aa13.7□□□□□ -0.22
LIG3-215ENST00000592690 POU2F3Q9UKI9 436 aa13.7□□□□□ -0.22
LIG3-215ENST00000592690 FLNAP21333 2647 aaKnown RBP13.69□□□□□ -0.22
LIG3-215ENST00000592690 ZNF469Q96JG9 3925 aaPredicted RBP13.69□□□□□ -0.22
LIG3-215ENST00000592690 A0A1W2PRG6 482 aa13.69□□□□□ -0.22
LIG3-215ENST00000592690 BCL10O95999 233 aa13.69□□□□□ -0.22
LIG3-215ENST00000592690 SEMG1P04279 462 aa13.69□□□□□ -0.22
LIG3-215ENST00000592690 CELA3BP08861 270 aa13.69□□□□□ -0.22
LIG3-215ENST00000592690 PGA4P0DJD7 388 aa13.69□□□□□ -0.22
LIG3-215ENST00000592690 PGA3P0DJD8 388 aa13.69□□□□□ -0.22
LIG3-215ENST00000592690 T-ENOLP0DO92 83 aa13.69□□□□□ -0.22
LIG3-215ENST00000592690 SAGP10523 405 aaPredicted RBP13.69□□□□□ -0.22
LIG3-215ENST00000592690 B4GALT1P15291 398 aa13.69□□□□□ -0.22
LIG3-215ENST00000592690 PTH2RP49190 550 aa13.69□□□□□ -0.22
LIG3-215ENST00000592690 MNAT1P51948 309 aa13.69□□□□□ -0.22
LIG3-215ENST00000592690 RPS4XP62701 263 aaKnown RBP13.69□□□□□ -0.22
LIG3-215ENST00000592690 RUNX1T1Q06455 604 aa13.69□□□□□ -0.22
LIG3-215ENST00000592690 LAPTM4AQ15012 233 aa13.69□□□□□ -0.22
LIG3-215ENST00000592690 RINLQ6ZS11 566 aa13.69□□□□□ -0.22
LIG3-215ENST00000592690 MYPOPQ86VE0 399 aaPredicted RBP13.69□□□□□ -0.22
LIG3-215ENST00000592690 ZNF566Q969W8 418 aa13.69□□□□□ -0.22
LIG3-215ENST00000592690 RADILQ96JH8 1075 aa13.69□□□□□ -0.22
LIG3-215ENST00000592690 NSMCE2Q96MF7 247 aa13.69□□□□□ -0.22
LIG3-215ENST00000592690 SLC38A2Q96QD8 506 aa13.69□□□□□ -0.22
LIG3-215ENST00000592690 CRNNQ9UBG3 495 aaPredicted RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms