RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 NPAS2Q99743 824 aa2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 TMEM43Q9BTV4 400 aa2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 NT5C3AQ9H0P0 336 aa2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 NTN4Q9HB63 628 aa2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 EXD2Q9NVH0 621 aa2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 EXTL2Q9UBQ6 330 aa2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 ZNF282Q9UDV7 671 aaPredicted RBP2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 ADAM28Q9UKQ2 775 aa2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 PHF3Q92576 2039 aaKnown RBP2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 SCN2AQ99250 2005 aa2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 NFASCO94856 1347 aa2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 IGLV3-22A0A075B6J6 115 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 C15orf38-AP3S2A0A0A6YYH1 394 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 PLAC8L1A1L4L8 177 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 B4GALT2O60909 372 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 CLDN9O95484 217 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 ZDHHC11BP0C7U3 371 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 IGHV3-43DP0DP04 118 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 TCN1P20061 433 aaPredicted RBP2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 MAGEA8P43361 318 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 AQP6Q13520 282 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 GNMTQ14749 295 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 PDK3Q15120 406 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 FAM83EQ2M2I3 478 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 ENPP6Q6UWR7 440 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 PP632Q6XCG6 107 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 RGS9BPQ6ZS82 235 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 H2AFVQ71UI9 128 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 ZNF695Q8IW36 515 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 ZCCHC7Q8N3Z6 543 aaKnown RBP2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 OR5D13Q8NGL4 314 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 CD300LFQ8TDQ1 290 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 BMFQ96LC9 184 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 PPA2Q9H2U2 334 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 ADAP2Q9NPF8 381 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 PACSIN2Q9UNF0 486 aaPredicted RBP2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 ASB3Q9Y575 518 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 N6AMT1Q9Y5N5 214 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 F11RQ9Y624 299 aaKnown RBP2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 MROH7-TTC4A0A0A0MT08 1334 aa2.63□□□□□ -1.99
SMCHD1-204ENST00000581226 MSH6P52701 1360 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 CARMIL3Q8ND23 1372 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 A0A1W2PQ67 120 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 ERVV-1B6SEH8 477 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 GPR89AB7ZAQ6 455 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 GOLGA8SH3BPF8 625 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 ZNF208O43345 1280 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 MGRN1O60291 552 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 UPK3AO75631 287 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 BGLAPP02818 100 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 RETP07949 1114 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 GPR89BP0CG08 455 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 RORAP35398 523 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 TAGLN2P37802 199 aaKnown RBP2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 GPR6P46095 362 aaPredicted RBP2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 ACTA2P62736 377 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 ACTC1P68032 377 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 SHHQ15465 462 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 DGUOKQ16854 277 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 CENPPQ6IPU0 288 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 CASC1Q6TDU7 716 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 LYPD2Q6UXB3 125 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 ZNF679Q8IYX0 411 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 TTC5Q8N0Z6 440 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 OR8J1Q8NGP2 316 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 FAM110BQ8TC76 370 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 SDR42E1Q8WUS8 393 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 GEMIN6Q8WXD5 167 aaKnown RBP2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 SLC41A3Q96GZ6 507 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 MS4A4EQ96PG1 132 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 MCCC2Q9HCC0 563 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 INPP5EQ9NRR6 644 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 OR12D3Q9UGF7 316 aa2.62□□□□□ -1.99
SMCHD1-204ENST00000581226 TMEM150BA6NC51 233 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 PCP4L1A6NKN8 68 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 FCMRO60667 390 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 ENTPD5O75356 428 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 MTX2O75431 263 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 CTDNEP1O95476 244 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 CALRP27797 417 aaKnown RBP2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 CD1CP29017 333 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 FDFT1P37268 417 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 NPBWR2P48146 333 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 SUB1P53999 127 aaKnown RBP eCLIP2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 OGDHQ02218 1023 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 UBE2SQ16763 222 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 TTLL9Q3SXZ7 439 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 PMF1Q6P1K2 205 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 TRIM40Q6P9F5 258 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 TPRX1Q8N7U7 411 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 TRPV1Q8NER1 839 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 UBALD1Q8TB05 177 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 SGK3Q96BR1 496 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 LRRC58Q96CX6 371 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 MED8Q96G25 268 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 SORT1Q99523 831 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 FAIM2Q9BWQ8 316 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 SCRT1Q9BWW7 348 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 GON7Q9BXV9 100 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 RSPO3Q9BXY4 272 aaPredicted RBP2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms