RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 TOP3AQ13472 1001 aaPredicted RBP17.07■□□□□ 0.32
SS18-209ENST00000578595 PHYHD1Q5SRE7 291 aa17.07■□□□□ 0.32
SS18-209ENST00000578595 ANKRD16Q6P6B7 361 aa17.07■□□□□ 0.32
SS18-209ENST00000578595 RINLQ6ZS11 566 aa17.07■□□□□ 0.32
SS18-209ENST00000578595 C20orf196Q8IYI0 205 aa17.07■□□□□ 0.32
SS18-209ENST00000578595 CDK20Q8IZL9 346 aa17.07■□□□□ 0.32
SS18-209ENST00000578595 DEPDC4Q8N2C3 294 aa17.07■□□□□ 0.32
SS18-209ENST00000578595 WDR31Q8NA23 367 aa17.07■□□□□ 0.32
SS18-209ENST00000578595 TMEM171Q8WVE6 324 aa17.07■□□□□ 0.32
SS18-209ENST00000578595 PIGTQ969N2 578 aa17.07■□□□□ 0.32
SS18-209ENST00000578595 RADILQ96JH8 1075 aa17.07■□□□□ 0.32
SS18-209ENST00000578595 ADAD1Q96M93 576 aaKnown RBP17.07■□□□□ 0.32
SS18-209ENST00000578595 FOXC2Q99958 501 aa17.07■□□□□ 0.32
SS18-209ENST00000578595 KCNS3Q9BQ31 491 aa17.07■□□□□ 0.32
SS18-209ENST00000578595 TMEM204Q9BSN7 226 aa17.07■□□□□ 0.32
SS18-209ENST00000578595 GORASP2Q9H8Y8 452 aa17.07■□□□□ 0.32
SS18-209ENST00000578595 INIPQ9NRY2 104 aa17.07■□□□□ 0.32
SS18-209ENST00000578595 POFUT2Q9Y2G5 429 aa17.07■□□□□ 0.32
SS18-209ENST00000578595 TEP1Q99973 2627 aaKnown RBP17.07■□□□□ 0.32
SS18-209ENST00000578595 EFCAB9A8MZ26 197 aa17.06■□□□□ 0.32
SS18-209ENST00000578595 H1F0P07305 194 aaKnown RBP17.06■□□□□ 0.32
SS18-209ENST00000578595 FUT4P22083 530 aa17.06■□□□□ 0.32
SS18-209ENST00000578595 PTAFRP25105 342 aa17.06■□□□□ 0.32
SS18-209ENST00000578595 GPR4P46093 362 aa17.06■□□□□ 0.32
SS18-209ENST00000578595 CLRN1P58418 232 aa17.06■□□□□ 0.32
SS18-209ENST00000578595 ZP4Q12836 540 aa17.06■□□□□ 0.32
SS18-209ENST00000578595 CYP2R1Q6VVX0 501 aa17.06■□□□□ 0.32
SS18-209ENST00000578595 MOSPD2Q8NHP6 518 aa17.06■□□□□ 0.32
SS18-209ENST00000578595 ACOT11Q8WXI4 607 aaPredicted RBP17.06■□□□□ 0.32
SS18-209ENST00000578595 ZNF566Q969W8 418 aa17.06■□□□□ 0.32
SS18-209ENST00000578595 PYURFQ96I23 114 aa17.06■□□□□ 0.32
SS18-209ENST00000578595 ALPK1Q96QP1 1244 aa17.06■□□□□ 0.32
SS18-209ENST00000578595 MAN2C1Q9NTJ4 1040 aa17.06■□□□□ 0.32
SS18-209ENST00000578595 BEX4Q9NWD9 120 aaPredicted RBP17.06■□□□□ 0.32
SS18-209ENST00000578595 CD300AQ9UGN4 299 aa17.06■□□□□ 0.32
SS18-209ENST00000578595 MGAT4BQ9UQ53 548 aa17.06■□□□□ 0.32
SS18-209ENST00000578595 ZNF99A8MXY4 864 aaPredicted RBP17.05■□□□□ 0.32
SS18-209ENST00000578595 PDE5AO76074 875 aa17.05■□□□□ 0.32
SS18-209ENST00000578595 ITGA2P17301 1181 aa17.05■□□□□ 0.32
SS18-209ENST00000578595 CD40P25942 277 aa17.05■□□□□ 0.32
SS18-209ENST00000578595 DAP3P51398 398 aaKnown RBP17.05■□□□□ 0.32
SS18-209ENST00000578595 LSM11P83369 360 aaKnown RBP eCLIP17.05■□□□□ 0.32
SS18-209ENST00000578595 VLDLRP98155 873 aa17.05■□□□□ 0.32
SS18-209ENST00000578595 SPIBQ01892 262 aa17.05■□□□□ 0.32
SS18-209ENST00000578595 ZNF672Q499Z4 452 aaPredicted RBP17.05■□□□□ 0.32
SS18-209ENST00000578595 ALG10Q5BKT4 473 aa17.05■□□□□ 0.32
SS18-209ENST00000578595 TBPL2Q6SJ96 375 aa17.05■□□□□ 0.32
SS18-209ENST00000578595 LURAP1LQ8IV03 231 aa17.05■□□□□ 0.32
SS18-209ENST00000578595 OR51A7Q8NH64 312 aa17.05■□□□□ 0.32
SS18-209ENST00000578595 OR6X1Q8NH79 312 aa17.05■□□□□ 0.32
SS18-209ENST00000578595 BCL2L2Q92843 193 aaPredicted RBP17.05■□□□□ 0.32
SS18-209ENST00000578595 MBD6Q96DN6 1003 aa17.05■□□□□ 0.32
SS18-209ENST00000578595 ZNF837Q96EG3 531 aaPredicted RBP17.05■□□□□ 0.32
SS18-209ENST00000578595 NMNAT1Q9HAN9 279 aaPredicted RBP17.05■□□□□ 0.32
SS18-209ENST00000578595 OBP2BQ9NPH6 170 aa17.05■□□□□ 0.32
SS18-209ENST00000578595 LAMP3Q9UQV4 416 aa17.05■□□□□ 0.32
SS18-209ENST00000578595 TRAV27A0A087WT01 109 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 A0A087WUU8 490 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 RPL36A-HNRNPH2H7BZ11 118 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 STAMBPO95630 424 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 IGF2P01344 180 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 IGHG1P01857 330 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 B4GALT1P15291 398 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 RHCEP18577 417 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 MAKP20794 623 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 NPRL3Q12980 569 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 SPATS1Q496A3 300 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 ZNF813Q6ZN06 617 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 TRPM8Q7Z2W7 1104 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 HDDC2Q7Z4H3 204 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 OAFQ86UD1 273 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 IGFN1Q86VF2 1251 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 WDFY1Q8IWB7 410 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 ZNF611Q8N823 705 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 OR13C2Q8NGS9 318 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 OR52J3Q8NH60 311 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 CCDC124Q96CT7 223 aaKnown RBP17.04■□□□□ 0.32
SS18-209ENST00000578595 PERPQ96FX8 193 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 LRR1Q96L50 414 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 KRCC1Q9NPI7 259 aaPredicted RBP17.04■□□□□ 0.32
SS18-209ENST00000578595 NDUFAF4Q9P032 175 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 ATP23Q9Y6H3 246 aa17.04■□□□□ 0.32
SS18-209ENST00000578595 HTR3EA5X5Y0 456 aa17.03■□□□□ 0.32
SS18-209ENST00000578595 PRSS23O95084 383 aa17.03■□□□□ 0.32
SS18-209ENST00000578595 FABP3P05413 133 aa17.03■□□□□ 0.32
SS18-209ENST00000578595 CD79AP11912 226 aa17.03■□□□□ 0.32
SS18-209ENST00000578595 MYBPC1Q00872 1141 aa17.03■□□□□ 0.32
SS18-209ENST00000578595 PRKCDQ05655 676 aa17.03■□□□□ 0.32
SS18-209ENST00000578595 LAPTM4AQ15012 233 aa17.03■□□□□ 0.32
SS18-209ENST00000578595 MBOAT2Q6ZWT7 520 aa17.03■□□□□ 0.32
SS18-209ENST00000578595 RNF113BQ8IZP6 322 aaKnown RBP17.03■□□□□ 0.32
SS18-209ENST00000578595 SYT14Q8NB59 555 aa17.03■□□□□ 0.32
SS18-209ENST00000578595 GTPBP3Q969Y2 492 aaKnown RBP17.03■□□□□ 0.32
SS18-209ENST00000578595 SLC25A44Q96H78 314 aaPredicted RBP17.03■□□□□ 0.32
SS18-209ENST00000578595 FAM46AQ96IP4 442 aaKnown RBP17.03■□□□□ 0.32
SS18-209ENST00000578595 SEPHS2Q99611 448 aa17.03■□□□□ 0.32
SS18-209ENST00000578595 PIP5K1AQ99755 562 aa17.03■□□□□ 0.32
SS18-209ENST00000578595 FOXB1Q99853 325 aa17.03■□□□□ 0.32
SS18-209ENST00000578595 NDEL1Q9GZM8 345 aa17.03■□□□□ 0.32
SS18-209ENST00000578595 NELFAQ9H3P2 528 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms