RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 DUSP16Q9BY84 665 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 IL22Q9GZX6 179 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 OR2AG1Q9H205 316 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 ANKRD19PQ9H560 264 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 Q9HAA7 133 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 NMRAL1Q9HBL8 299 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 POPDC2Q9HBU9 364 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 SPACA1Q9HBV2 294 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 TREM1Q9NP99 234 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 PNO1Q9NRX1 252 aaKnown RBP4.86□□□□□ -1.63
VPS53-219ENST00000576019 MAN2C1Q9NTJ4 1040 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 ZDHHC18Q9NUE0 388 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 DHRS7Q9Y394 339 aa4.86□□□□□ -1.63
VPS53-219ENST00000576019 AK6Q9Y3D8 172 aaKnown RBP4.86□□□□□ -1.63
VPS53-219ENST00000576019 A0A0J9YYE9 177 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 A0A1W2PPV9 198 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 TM9SF1O15321 606 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 CLOCKO15516 846 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 CHMP2AO43633 222 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 ATP5LO75964 103 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 POP4O95707 220 aaKnown RBP4.85□□□□□ -1.63
VPS53-219ENST00000576019 JCHAINP01591 159 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 TRBC1P01850 177 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 P04436 131 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 GP1BAP07359 652 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 PLEKP08567 350 aaPredicted RBP4.85□□□□□ -1.63
VPS53-219ENST00000576019 GCAP28676 217 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 GTF2E2P29084 291 aaKnown RBP4.85□□□□□ -1.63
VPS53-219ENST00000576019 CD80P33681 288 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 POU3F4P49335 361 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 PDLIM4P50479 330 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 CDK16Q00536 496 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 PLOD1Q02809 727 aaPredicted RBP4.85□□□□□ -1.63
VPS53-219ENST00000576019 XRCC4Q13426 336 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 ITIH4Q14624 930 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 TMEM187Q14656 261 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 RAB35Q15286 201 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 PPP1R3AQ16821 1122 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 TECRLQ5HYJ1 363 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 WSCD1Q658N2 575 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 ERICH5Q6P6B1 374 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 UTS2BQ765I0 119 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 APTXQ7Z2E3 356 aaKnown RBP4.85□□□□□ -1.63
VPS53-219ENST00000576019 SPATA24Q86W54 205 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 FAM86B1Q8N7N1 296 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 ZSCAN4Q8NAM6 433 aaPredicted RBP4.85□□□□□ -1.63
VPS53-219ENST00000576019 OR10A7Q8NGE5 316 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 OR4D10Q8NGI6 311 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 OR2T11Q8NH01 316 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 MAGEE2Q8TD90 523 aaPredicted RBP4.85□□□□□ -1.63
VPS53-219ENST00000576019 CD300LFQ8TDQ1 290 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 BIRC7Q96CA5 298 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 RAB3CQ96E17 227 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 ZNF479Q96JC4 524 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 FEM1AQ9BSK4 669 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 RBM4Q9BWF3 364 aaKnown RBP4.85□□□□□ -1.63
VPS53-219ENST00000576019 KRTAP4-7Q9BYR0 210 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 ATP13A3Q9H7F0 1226 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 ZDHHC4Q9NPG8 344 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 INPP5EQ9NRR6 644 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 RASD1Q9Y272 281 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 PEX16Q9Y5Y5 336 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 ZNF532Q9HCE3 1301 aa4.85□□□□□ -1.63
VPS53-219ENST00000576019 MYO18AQ92614 2054 aaKnown RBP4.85□□□□□ -1.63
VPS53-219ENST00000576019 CHD3Q12873 2000 aaKnown RBP4.84□□□□□ -1.63
VPS53-219ENST00000576019 SAA2-SAA4A0A096LPE2 208 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 TRBV11-1A0A0K0K1C0 115 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 TUBAL3A6NHL2 446 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 ZNF724A8MTY0 619 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 H3BNX3 289 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 RBMXL2O75526 392 aaKnown RBP4.84□□□□□ -1.63
VPS53-219ENST00000576019 KRT36O76013 467 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 PDE5AO76074 875 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 TMEM50AO95807 157 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 HBQ1P09105 142 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 CT62P0C5K7 136 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 UMPSP11172 480 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 ATP5A1P25705 553 aaKnown RBP4.84□□□□□ -1.63
VPS53-219ENST00000576019 GNA11P29992 359 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 GPR183P32249 361 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 RPL4P36578 427 aaKnown RBP4.84□□□□□ -1.63
VPS53-219ENST00000576019 YWHAGP61981 247 aaKnown RBP eCLIP4.84□□□□□ -1.63
VPS53-219ENST00000576019 RPS27AP62979 156 aaKnown RBP4.84□□□□□ -1.63
VPS53-219ENST00000576019 CSNK2BP67870 215 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 DEFA6Q01524 100 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 TWF1Q12792 350 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 SGSM1Q2NKQ1 1148 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 KLHL38Q2WGJ6 581 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 GLYR1Q49A26 553 aaPredicted RBP4.84□□□□□ -1.63
VPS53-219ENST00000576019 CYBRD1Q53TN4 286 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 VWA2Q5GFL6 755 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 NIPA1Q7RTP0 329 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 RD3Q7Z3Z2 195 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 CATSPERDQ86XM0 798 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 PROKR2Q8NFJ6 384 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 ACMSDQ8TDX5 336 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 TBCKQ8TEA7 893 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 GATAD1Q8WUU5 269 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 SECTM1Q8WVN6 248 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 FCAMRQ8WWV6 532 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms