RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 FOXN4Q96NZ1 517 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 OR52B2Q96RD2 323 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 KCNK17Q96T54 332 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 DOK1Q99704 481 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 WFDC6Q9BQY6 131 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 KATNB1Q9BVA0 655 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 LINC00470Q9BZP3 86 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 PAIP1Q9H074 479 aaKnown RBP5.83□□□□□ -1.48
VPS53-213ENST00000572334 PLK3Q9H4B4 646 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 FKRPQ9H9S5 495 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 TPT1P8Q9HAU6 139 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 SDR39U1Q9NRG7 319 aaPredicted RBP5.83□□□□□ -1.48
VPS53-213ENST00000572334 CA10Q9NS85 328 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 ADPRHL2Q9NX46 363 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 P2RX2Q9UBL9 471 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 TAGLN3Q9UI15 199 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 A0A096LPE4 126 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 A0A1W2PPZ6 126 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 RFXANKO14593 260 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 HDAC3O15379 428 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 TPST2O60704 377 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 LILRA1O75019 489 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 TPPPO94811 219 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 VAMP5O95183 116 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 KRT75O95678 551 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 BAG2O95816 211 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 WNT11O96014 354 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 HPRP00739 348 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 CSF3P09919 207 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 OR4A8P0C604 315 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 CXCR1P25024 350 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 HTR2AP28223 471 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 IL2RGP31785 369 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 SERPINF1P36955 418 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 PDLIM4P50479 330 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 DSTNP60981 165 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 CHRNB3Q05901 458 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 GGTLC2Q14390 218 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 RGS21Q2M5E4 152 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 C3orf36Q3SXR2 165 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 FAM120AOSQ5T036 256 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 PRAMEF8Q5VWM4 474 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 PRAMEF7Q5VXH5 474 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 FOXB2Q5VYV0 432 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 TMEM225Q6GV28 225 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 ANKRD13BQ86YJ7 626 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 TMEM123Q8N131 208 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 ZCCHC24Q8N2G6 241 aaKnown RBP5.82□□□□□ -1.48
VPS53-213ENST00000572334 CADM2Q8N3J6 435 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 FAM169BQ8N8A8 192 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 MFSD8Q8NHS3 518 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 GTF2H4Q92759 462 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 MAL2Q969L2 176 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 SPATA9Q9BWV2 254 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 BEX2Q9BXY8 128 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 CADM1Q9BY67 442 aaKnown RBP5.82□□□□□ -1.48
VPS53-213ENST00000572334 BPESC1Q9GZL8 116 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 NOX3Q9HBY0 568 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 BCL2L10Q9HD36 194 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 OBP2BQ9NPH6 170 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 SLC52A3Q9NQ40 469 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 THAP1Q9NVV9 213 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 TMEM45AQ9NWC5 275 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 SLC25A37Q9NYZ2 338 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 ZIM2Q9NZV7 527 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 SLAMF8Q9P0V8 285 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 RASD1Q9Y272 281 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 PCDHB14Q9Y5E9 798 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 PMF1-BGLAPU3KQ54 211 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 TRRAPQ9Y4A5 3859 aa5.82□□□□□ -1.48
VPS53-213ENST00000572334 A0A096LPI6 279 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 IGHV2OR16-5A0A0B4J2B6 119 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 A0A0G2JPF8 293 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 LOC390937A0A1W2PQ73 354 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 LRP5LA4QPB2 252 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 HNRNPCL2B2RXH8 293 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 HNRNPCL3B7ZW38 293 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 B9A039 149 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 ZNF587BE7ETH6 402 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 MS4A18H0YCH9 400 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 NDUFS8O00217 210 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 FBP2O00757 339 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 TRAF3IP2O43734 574 aaPredicted RBP5.81□□□□□ -1.48
VPS53-213ENST00000572334 TPST1O60507 370 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 MTRF1O75570 445 aaKnown RBP5.81□□□□□ -1.48
VPS53-213ENST00000572334 SLC22A3O75751 556 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 KRT36O76013 467 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 STAMBPO95630 424 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 IL6P05231 212 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 C8BP07358 591 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 TACSTD2P09758 323 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 HNRNPCL4P0DMR1 293 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 KITP10721 976 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 HLA-DOBP13765 273 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 CBR1P16152 277 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 ZNF23P17027 643 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 GIFP27352 417 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 THBS4P35443 961 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 CRATP43155 626 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 RPS5P46782 204 aaKnown RBP5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms