RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 OR51V1Q9H2C8 321 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 CHST11Q9NPF2 352 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 ASCL3Q9NQ33 180 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 TRIM36Q9NQ86 728 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 ERVK13-1Q9NX77 482 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 BABAM2Q9NXR7 383 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 TAS2R5Q9NYW4 299 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 AASSQ9UDR5 926 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 IL20RAQ9UHF4 553 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 NPIPA1Q9UND3 350 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 SSR3Q9UNL2 185 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 POLHQ9Y253 713 aa7.18□□□□□ -1.26
VPS39-213ENST00000570062 ASH1LQ9NR48 2969 aaKnown RBP7.18□□□□□ -1.26
VPS39-213ENST00000570062 TEX13CA0A0J9YWL9 993 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 PRSS37A4D1T9 235 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 OR5H15A6NDH6 313 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 ZNF670-ZNF695F2Z2N8 137 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 J3QRE1 110 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 ARHGEF9O43307 516 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 GMFGO60234 142 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 TMEM127O75204 238 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 SERPINA3P01011 423 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 PTHP01270 115 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 HLA-DPB1P04440 258 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 LCKP06239 509 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 HSMCR30P0CW71 290 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 CCL3P10147 92 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 SPI1P17947 270 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 F8A1P23610 371 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 SOX6P35712 828 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 ACVR1BP36896 505 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 CD96P40200 585 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 GBX2P52951 348 aaPredicted RBP7.17□□□□□ -1.26
VPS39-213ENST00000570062 Q0VFX4 171 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 MFAP5Q13361 173 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 LSAMPQ13449 338 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 OR7A5Q15622 319 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 BCL2A1Q16548 175 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 HYAL4Q2M3T9 481 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 TMEM225Q6GV28 225 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 SLC25A25Q6KCM7 469 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 ARSKQ6UWY0 536 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 PAMR1Q6UXH9 720 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 PLEKHG7Q6ZR37 379 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 ESPNLQ6ZVH7 1005 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 SHFQ7M4L6 423 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 SLC16A9Q7RTY1 509 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 UEVLDQ8IX04 471 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 BEST3Q8N1M1 668 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 SIRT6Q8N6T7 355 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 TMEM178AQ8NBL3 297 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 SDR9C7Q8NEX9 313 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 OR51G2Q8NGK0 314 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 ASB17Q8WXJ9 295 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 SMPDL3BQ92485 455 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 SGCDQ92629 289 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 PNPLA2Q96AD5 504 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 RNF31Q96EP0 1072 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 OXGR1Q96P68 337 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 NMNAT3Q96T66 252 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 MESP1Q9BRJ9 268 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 SF3B5Q9BWJ5 86 aaKnown RBP7.17□□□□□ -1.26
VPS39-213ENST00000570062 OR2B2Q9GZK3 357 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 ENKD1Q9H0I2 346 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 KCNN2Q9H2S1 579 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 KLHL1Q9NR64 748 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 ASB6Q9NWX5 421 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 NDUFB11Q9NX14 153 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 VSX1Q9NZR4 365 aaPredicted RBP7.17□□□□□ -1.26
VPS39-213ENST00000570062 ZNF346Q9UL40 294 aaKnown RBP7.17□□□□□ -1.26
VPS39-213ENST00000570062 LSM2Q9Y333 95 aaKnown RBP7.17□□□□□ -1.26
VPS39-213ENST00000570062 SEC16AO15027 2179 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 SPTBN2O15020 2390 aa7.17□□□□□ -1.26
VPS39-213ENST00000570062 LAMA1P25391 3075 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 ELOA3CA0A087WX78 387 aaPredicted RBP7.16□□□□□ -1.26
VPS39-213ENST00000570062 FAM183AA6NL82 134 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 ZNF726A6NNF4 738 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 C12orf71A8MTZ7 269 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 LRRN3E7EW58 273 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 M0R082 166 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 M0R129 80 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 ACOT7O00154 380 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 SULT2B1O00204 365 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 SULT1C4O75897 302 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 SLC2A10O95528 541 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 F13BP05160 661 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 SP1P08047 785 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 CELA2AP08217 269 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 LIMS3P0CW19 117 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 LIMS4P0CW20 117 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 ZNF43P17038 809 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 GABRA5P31644 462 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 GUCA1AP43080 201 aaPredicted RBP7.16□□□□□ -1.26
VPS39-213ENST00000570062 RANBP1P43487 201 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 AGFG1P52594 562 aaKnown RBP7.16□□□□□ -1.26
VPS39-213ENST00000570062 MLLT10P55197 1068 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 OR2B6P58173 313 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 RAC3P60763 192 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 HSF1Q00613 529 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 GLO1Q04760 184 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms