RNA–Protein interactions for RNA: ENST00000569080.1

CDH3-209, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 291 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-209ENST00000569080 CHD3Q12873 2000 aaKnown RBP6.79□□□□□ -1.32
CDH3-209ENST00000569080 YLPM1P49750 1951 aaKnown RBP6.78□□□□□ -1.32
CDH3-209ENST00000569080 ATRQ13535 2644 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 LOC100653049A0A140TA62 436 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 C11orf98E9PRG8 122 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 KPNA4O00629 521 aaPredicted RBP6.78□□□□□ -1.32
CDH3-209ENST00000569080 SSX4O60224 188 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 SHOX2O60902 331 aaPredicted RBP6.78□□□□□ -1.32
CDH3-209ENST00000569080 KRT34O76011 436 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 LY6HO94772 140 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 OR5F1O95221 314 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 CH25HO95992 272 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 IGF2P01344 180 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 HLA-HP01893 362 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 IGFBP1P08833 259 aaPredicted RBP6.78□□□□□ -1.32
CDH3-209ENST00000569080 PGA4P0DJD7 388 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 PGA3P0DJD8 388 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 ADORA3P0DMS8 318 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 IFNGR1P15260 489 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 ZNF14P17017 642 aaPredicted RBP6.78□□□□□ -1.32
CDH3-209ENST00000569080 PCSK6P29122 969 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 APOBEC3AP31941 199 aaPredicted RBP6.78□□□□□ -1.32
CDH3-209ENST00000569080 MDH1P40925 334 aaKnown RBP6.78□□□□□ -1.32
CDH3-209ENST00000569080 IDH3GP51553 393 aaPredicted RBP6.78□□□□□ -1.32
CDH3-209ENST00000569080 NUDT6P53370 316 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 BIDP55957 195 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 ZP4Q12836 540 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 PIN1Q13526 163 aaPredicted RBP6.78□□□□□ -1.32
CDH3-209ENST00000569080 CAMK2DQ13557 499 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 EFNB3Q15768 340 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 MSMPQ1L6U9 139 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 CYBRD1Q53TN4 286 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 MDP1Q86V88 176 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 PRIMA1Q86XR5 153 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 TREML1Q86YW5 311 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 NKAIN4Q8IVV8 208 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 DEPDC4Q8N2C3 294 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 POU5F2Q8N7G0 328 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 OR6X1Q8NH79 312 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 PFN4Q8NHR9 129 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 TMEM255BQ8WV15 326 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 LIPHQ8WWY8 451 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 NANOS1Q8WY41 292 aaKnown RBP6.78□□□□□ -1.32
CDH3-209ENST00000569080 TMEM54Q969K7 222 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 ADAD1Q96M93 576 aaKnown RBP6.78□□□□□ -1.32
CDH3-209ENST00000569080 SORCS2Q96PQ0 1159 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 ULBP2Q9BZM5 246 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 POLR2J2Q9GZM3 115 aaKnown RBP6.78□□□□□ -1.32
CDH3-209ENST00000569080 POLR2J3Q9H1A7 115 aaKnown RBP6.78□□□□□ -1.32
CDH3-209ENST00000569080 ZNF442Q9H7R0 627 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 MAN2C1Q9NTJ4 1040 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 C20orf141Q9NUB4 165 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 BAG5Q9UL15 447 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 SH3GLB1Q9Y371 365 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 RTTNQ86VV8 2226 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 MXRA5Q9NR99 2828 aa6.78□□□□□ -1.32
CDH3-209ENST00000569080 VWC2LB2RUY7 222 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 NME4O00746 187 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 PIP5K1CO60331 668 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 SERPINI2O75830 405 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 PRSS23O95084 383 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 CRYAAP02489 173 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 MT-ND1P03886 318 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 B4GALT1P15291 398 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 AHCYP23526 432 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 KDELR2P33947 212 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 ARR3P36575 388 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 RBM34P42696 430 aaKnown RBP6.77□□□□□ -1.33
CDH3-209ENST00000569080 OR1E2P47887 323 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 CSNK1A1P48729 337 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 EFNA4P52798 201 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 LSM11P83369 360 aaKnown RBP eCLIP6.77□□□□□ -1.33
CDH3-209ENST00000569080 IL1RL1Q01638 556 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 RUNX1T1Q06455 604 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 RPL18Q07020 188 aaKnown RBP6.77□□□□□ -1.33
CDH3-209ENST00000569080 NPRL3Q12980 569 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 MELKQ14680 651 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 HIST3H3Q16695 136 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 MMEL1Q495T6 779 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 LRRC23Q53EV4 343 aaPredicted RBP6.77□□□□□ -1.33
CDH3-209ENST00000569080 TTC33Q6PID6 262 aaPredicted RBP6.77□□□□□ -1.33
CDH3-209ENST00000569080 LRFN4Q6PJG9 635 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 ZNF813Q6ZN06 617 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 DEF8Q6ZN54 512 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 SLC35D2Q76EJ3 337 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 ZNF584Q8IVC4 421 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 SLC15A3Q8IY34 581 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 CCDC36Q8IYA8 594 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 MICU2Q8IYU8 434 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 C10orf53Q8N6V4 93 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 PCYOX1LQ8NBM8 494 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 OR2T12Q8NG77 320 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 FGFBP3Q8TAT2 258 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 SLC26A7Q8TE54 656 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 C10orf105Q8TEF2 133 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 PROX1Q92786 737 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 NMD3Q96D46 503 aaKnown RBP6.77□□□□□ -1.33
CDH3-209ENST00000569080 FBXO17Q96EF6 278 aa6.77□□□□□ -1.33
CDH3-209ENST00000569080 SLC25A44Q96H78 314 aaPredicted RBP6.77□□□□□ -1.33
CDH3-209ENST00000569080 MS4A3Q96HJ5 214 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms