RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 SLC7A5Q01650 507 aa9.91□□□□□ -0.82
CLK3-222ENST00000568232 GPAT3Q53EU6 434 aa9.91□□□□□ -0.82
CLK3-222ENST00000568232 SPRNQ5BIV9 151 aa9.91□□□□□ -0.82
CLK3-222ENST00000568232 KPRPQ5T749 579 aaPredicted RBP9.91□□□□□ -0.82
CLK3-222ENST00000568232 ATAD3BQ5T9A4 648 aa9.91□□□□□ -0.82
CLK3-222ENST00000568232 SAMD5Q5TGI4 173 aa9.91□□□□□ -0.82
CLK3-222ENST00000568232 BRD3OSQ6XYD6 125 aa9.91□□□□□ -0.82
CLK3-222ENST00000568232 ZCCHC23Q6ZST2 131 aa9.91□□□□□ -0.82
CLK3-222ENST00000568232 TMEM123Q8N131 208 aa9.91□□□□□ -0.82
CLK3-222ENST00000568232 LINC01006Q8NI28 216 aa9.91□□□□□ -0.82
CLK3-222ENST00000568232 FGFBP3Q8TAT2 258 aa9.91□□□□□ -0.82
CLK3-222ENST00000568232 OIT3Q8WWZ8 545 aa9.91□□□□□ -0.82
CLK3-222ENST00000568232 DCLRE1CQ96SD1 692 aaKnown RBP9.91□□□□□ -0.82
CLK3-222ENST00000568232 C1orf50Q9BV19 199 aa9.91□□□□□ -0.82
CLK3-222ENST00000568232 DUSP26Q9BV47 211 aa9.91□□□□□ -0.82
CLK3-222ENST00000568232 RAB17Q9H0T7 212 aa9.91□□□□□ -0.82
CLK3-222ENST00000568232 SLC6A13Q9NSD5 602 aa9.91□□□□□ -0.82
CLK3-222ENST00000568232 ATAD3AQ9NVI7 634 aa9.91□□□□□ -0.82
CLK3-222ENST00000568232 ASH2LQ9UBL3 628 aa9.91□□□□□ -0.82
CLK3-222ENST00000568232 GPR160Q9UJ42 338 aa9.91□□□□□ -0.82
CLK3-222ENST00000568232 POLR3KQ9Y2Y1 108 aaPredicted RBP9.91□□□□□ -0.82
CLK3-222ENST00000568232 DNAH3Q8TD57 4116 aa9.91□□□□□ -0.82
CLK3-222ENST00000568232 EPPK1P58107 5090 aaKnown RBP9.9□□□□□ -0.82
CLK3-222ENST00000568232 TRAV40A0A0B4J280 105 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 AGAP5A6NIR3 686 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 FTCDNL1E5RQL4 147 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 H3BQF6 201 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 FAAHO00519 579 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 AZIN1O14977 448 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 SPRY3O43610 288 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 PEX11AO75192 247 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 CLPXO76031 633 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 UBOX5O94941 541 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 LCKP06239 509 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 GUSBP08236 651 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 SBK2P0C263 348 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 MYL2P10916 166 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 NEFHP12036 1026 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 GCAP28676 217 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 RPL3P39023 403 aaKnown RBP9.9□□□□□ -0.82
CLK3-222ENST00000568232 SLC6A9P48067 706 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 PROK1P58294 105 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 PAX8Q06710 450 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 MFSD13AQ14CX5 517 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 CFAP157Q5JU67 520 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 ZYG11AQ6WRX3 759 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 TIFABQ6ZNK6 161 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 CADM2Q8N3J6 435 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 ICA1LQ8NDH6 482 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 PIK3C3Q8NEB9 887 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 MIPOL1Q8TD10 442 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 ELMOD3Q96FG2 381 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 POLE3Q9NRF9 147 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 RLIMQ9NVW2 624 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 SLCO1C1Q9NYB5 712 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 DNAJC15Q9Y5T4 150 aa9.9□□□□□ -0.82
CLK3-222ENST00000568232 LOC100653049A0A140TA62 436 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 SLC22A23A1A5C7 686 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 TMEM114B3SHH9 223 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 TMEM233B4DJY2 109 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 NPIPB7O75200 414 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 KRT34O76011 436 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 IGHV1-46P01743 117 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 SERPINA5P05154 406 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 LSP1P33241 339 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 RPS5P46782 204 aaKnown RBP9.89□□□□□ -0.83
CLK3-222ENST00000568232 LOXL3P58215 753 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 C1DQ13901 141 aaKnown RBP9.89□□□□□ -0.83
CLK3-222ENST00000568232 SYPL1Q16563 259 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 GSTA3Q16772 222 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 PGS1Q32NB8 556 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 MRPL2Q5T653 305 aaKnown RBP9.89□□□□□ -0.83
CLK3-222ENST00000568232 ATG16L1Q676U5 607 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 C11orf87Q6NUJ2 197 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 REC114Q7Z4M0 266 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 SKA3Q8IX90 412 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 RIMKLAQ8IXN7 391 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 DDIASQ8IXT1 998 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 ANKFN1Q8N957 763 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 OR10S1Q8NGN2 331 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 CCDC126Q96EE4 140 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 C16orf45Q96MC5 204 aaPredicted RBP9.89□□□□□ -0.83
CLK3-222ENST00000568232 OXGR1Q96P68 337 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 EMC6Q9BV81 110 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 PTDSS2Q9BVG9 487 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 POFUT2Q9Y2G5 429 aa9.89□□□□□ -0.83
CLK3-222ENST00000568232 NUP214P35658 2090 aaPredicted RBP9.88□□□□□ -0.83
CLK3-222ENST00000568232 H0YL77 283 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 AGR2O95994 175 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 IGHV2-70P01814 119 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 CSF1P09603 554 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 HLA-DOBP13765 273 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 ACAA2P42765 397 aaKnown RBP9.88□□□□□ -0.83
CLK3-222ENST00000568232 ZNF81P51508 661 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 RBBP4Q09028 425 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 CAMK2DQ13557 499 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 PDCD1Q15116 288 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 C2orf68Q2NKX9 166 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 TMEM255AQ5JRV8 349 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 KANK2Q63ZY3 851 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms