RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 CARD17Q5XLA6 110 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 C8orf82Q6P1X6 216 aaPredicted RBP12.89□□□□□ -0.35
CLN3-213ENST00000565047 TTC33Q6PID6 262 aaPredicted RBP12.89□□□□□ -0.35
CLN3-213ENST00000565047 LRFN4Q6PJG9 635 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 MDP1Q86V88 176 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 SNX32Q86XE0 403 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 NKAIN4Q8IVV8 208 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 CCDC36Q8IYA8 594 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 ZNF525Q8N782 197 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 OR6X1Q8NH79 312 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 ECSITQ9BQ95 431 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 ZNF229Q9UJW7 825 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 SH3GLB1Q9Y371 365 aa12.89□□□□□ -0.35
CLN3-213ENST00000565047 IGHV2OR16-5A0A0B4J2B6 119 aa12.88□□□□□ -0.35
CLN3-213ENST00000565047 VWC2LB2RUY7 222 aa12.88□□□□□ -0.35
CLN3-213ENST00000565047 SLC22A2O15244 555 aa12.88□□□□□ -0.35
CLN3-213ENST00000565047 GPRIN2O60269 458 aa12.88□□□□□ -0.35
CLN3-213ENST00000565047 HLA-HP01893 362 aa12.88□□□□□ -0.35
CLN3-213ENST00000565047 VIMP08670 466 aaKnown RBP12.88□□□□□ -0.35
CLN3-213ENST00000565047 ADORA3P0DMS8 318 aa12.88□□□□□ -0.35
CLN3-213ENST00000565047 IFNGR1P15260 489 aa12.88□□□□□ -0.35
CLN3-213ENST00000565047 ZNF14P17017 642 aaPredicted RBP12.88□□□□□ -0.35
CLN3-213ENST00000565047 FUT4P22083 530 aa12.88□□□□□ -0.35
CLN3-213ENST00000565047 KDELR2P33947 212 aa12.88□□□□□ -0.35
CLN3-213ENST00000565047 SERPINF1P36955 418 aa12.88□□□□□ -0.35
CLN3-213ENST00000565047 DSCR9P59020 149 aa12.88□□□□□ -0.35
CLN3-213ENST00000565047 CHRNB3Q05901 458 aa12.88□□□□□ -0.35
CLN3-213ENST00000565047 LOXL1Q08397 574 aaPredicted RBP12.88□□□□□ -0.35
CLN3-213ENST00000565047 HIST3H3Q16695 136 aa12.88□□□□□ -0.35
CLN3-213ENST00000565047 CARM1Q86X55 608 aa12.88□□□□□ -0.35
CLN3-213ENST00000565047 C10orf105Q8TEF2 133 aa12.88□□□□□ -0.35
CLN3-213ENST00000565047 LIPHQ8WWY8 451 aa12.88□□□□□ -0.35
CLN3-213ENST00000565047 FBXO17Q96EF6 278 aa12.88□□□□□ -0.35
CLN3-213ENST00000565047 SEPHS2Q99611 448 aa12.88□□□□□ -0.35
CLN3-213ENST00000565047 RHNO1Q9BSD3 238 aa12.88□□□□□ -0.35
CLN3-213ENST00000565047 PLK3Q9H4B4 646 aa12.88□□□□□ -0.35
CLN3-213ENST00000565047 ZNF442Q9H7R0 627 aa12.88□□□□□ -0.35
CLN3-213ENST00000565047 CMTM6Q9NX76 183 aa12.88□□□□□ -0.35
CLN3-213ENST00000565047 ARMCX1Q9P291 453 aa12.88□□□□□ -0.35
CLN3-213ENST00000565047 GMPR2Q9P2T1 348 aaKnown RBP12.88□□□□□ -0.35
CLN3-213ENST00000565047 ABCA1O95477 2261 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 FAM220BPB1ANY3 271 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 B9A039 149 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 C11orf98E9PRG8 122 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 CD5LO43866 347 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 MT-ND1P03886 318 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 OR4A8P0C604 315 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 ZNF35P13682 527 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 AHCYP23526 432 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 THBS4P35443 961 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 IDH3GP51553 393 aaPredicted RBP12.87□□□□□ -0.35
CLN3-213ENST00000565047 UGT2B15P54855 530 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 BIDP55957 195 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 IL1RL1Q01638 556 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 PIN1Q13526 163 aaPredicted RBP12.87□□□□□ -0.35
CLN3-213ENST00000565047 MAPRE2Q15555 327 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 MSMPQ1L6U9 139 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 MMEL1Q495T6 779 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 ERICH5Q6P6B1 374 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 SLC35D2Q76EJ3 337 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 C10orf53Q8N6V4 93 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 OR4F15Q8NGB8 312 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 FGFBP3Q8TAT2 258 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 SLC26A7Q8TE54 656 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 SORCS2Q96PQ0 1159 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 DOK1Q99704 481 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 FOXB1Q99853 325 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 MRPL13Q9BYD1 178 aaKnown RBP12.87□□□□□ -0.35
CLN3-213ENST00000565047 POLR2J2Q9GZM3 115 aaKnown RBP12.87□□□□□ -0.35
CLN3-213ENST00000565047 POLR2J3Q9H1A7 115 aaKnown RBP12.87□□□□□ -0.35
CLN3-213ENST00000565047 NANSQ9NR45 359 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 C20orf141Q9NUB4 165 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 RIMS3Q9UJD0 308 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 BAG5Q9UL15 447 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 PMF1-BGLAPU3KQ54 211 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 YLPM1P49750 1951 aaKnown RBP12.87□□□□□ -0.35
CLN3-213ENST00000565047 JMJD1CQ15652 2540 aa12.87□□□□□ -0.35
CLN3-213ENST00000565047 ZNF726A6NNF4 738 aa12.86□□□□□ -0.35
CLN3-213ENST00000565047 KIAA1324LA8MWY0 1029 aaPredicted RBP12.86□□□□□ -0.35
CLN3-213ENST00000565047 KPNA4O00629 521 aaPredicted RBP12.86□□□□□ -0.35
CLN3-213ENST00000565047 SHOX2O60902 331 aaPredicted RBP12.86□□□□□ -0.35
CLN3-213ENST00000565047 CRLF1O75462 422 aa12.86□□□□□ -0.35
CLN3-213ENST00000565047 OR5F1O95221 314 aa12.86□□□□□ -0.35
CLN3-213ENST00000565047 PGA4P0DJD7 388 aa12.86□□□□□ -0.35
CLN3-213ENST00000565047 PGA3P0DJD8 388 aa12.86□□□□□ -0.35
CLN3-213ENST00000565047 BMP4P12644 408 aa12.86□□□□□ -0.35
CLN3-213ENST00000565047 MDH1P40925 334 aaKnown RBP12.86□□□□□ -0.35
CLN3-213ENST00000565047 RBM34P42696 430 aaKnown RBP12.86□□□□□ -0.35
CLN3-213ENST00000565047 OR1E2P47887 323 aa12.86□□□□□ -0.35
CLN3-213ENST00000565047 LSM11P83369 360 aaKnown RBP eCLIP12.86□□□□□ -0.35
CLN3-213ENST00000565047 RUNX1T1Q06455 604 aa12.86□□□□□ -0.35
CLN3-213ENST00000565047 CLEC2AQ6UVW9 174 aa12.86□□□□□ -0.35
CLN3-213ENST00000565047 ZNF584Q8IVC4 421 aa12.86□□□□□ -0.35
CLN3-213ENST00000565047 SLC15A3Q8IY34 581 aa12.86□□□□□ -0.35
CLN3-213ENST00000565047 PCYOX1LQ8NBM8 494 aa12.86□□□□□ -0.35
CLN3-213ENST00000565047 IL17RDQ8NFM7 739 aa12.86□□□□□ -0.35
CLN3-213ENST00000565047 PFN4Q8NHR9 129 aa12.86□□□□□ -0.35
CLN3-213ENST00000565047 RP9Q8TA86 221 aaKnown RBP12.86□□□□□ -0.35
CLN3-213ENST00000565047 TMEM255BQ8WV15 326 aa12.86□□□□□ -0.35
CLN3-213ENST00000565047 PROX1Q92786 737 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms