RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 ALG1L2C9J202 215 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 MAGEB4O15481 346 aaPredicted RBP8.38□□□□□ -1.07
VPS39-205ENST00000562258 HPRP00739 348 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 DBHP09172 617 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 FAM157BP0CG42 384 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 FCGR2AP12318 317 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 FABP6P51161 128 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 RELAQ04206 551 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 DYNC1I2Q13409 638 aaKnown RBP8.38□□□□□ -1.07
VPS39-205ENST00000562258 HSD17B12Q53GQ0 312 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 OGFRL1Q5TC84 451 aaPredicted RBP8.38□□□□□ -1.07
VPS39-205ENST00000562258 LCN10Q6JVE6 187 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 PEG10Q86TG7 708 aaKnown RBP8.38□□□□□ -1.07
VPS39-205ENST00000562258 C10orf111Q8N326 155 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 OR10D3Q8NH80 312 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 MIB2Q96AX9 1013 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 ZNF346Q9UL40 294 aaKnown RBP8.38□□□□□ -1.07
VPS39-205ENST00000562258 PCDHB10Q9UN67 800 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 EXO1Q9UQ84 846 aaKnown RBP8.38□□□□□ -1.07
VPS39-205ENST00000562258 ANKRD36A6QL64 1941 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 HCCSP53701 268 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 TUBA1BP68363 451 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 TUBA4AP68366 448 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 GK3PQ14409 553 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 SHBQ15464 509 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 ZNF829Q3KNS6 432 aaPredicted RBP8.37□□□□□ -1.07
VPS39-205ENST00000562258 SLC36A2Q495M3 483 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 DHRS4L2Q6PKH6 230 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 KLHL17Q6TDP4 642 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 C5orf46Q6UWT4 87 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 TUBA1AQ71U36 451 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 PRSS33Q8NF86 280 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 M1APQ8TC57 530 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 HDAC2Q92769 488 aaKnown RBP8.37□□□□□ -1.07
VPS39-205ENST00000562258 DGCR14Q96DF8 476 aaKnown RBP8.37□□□□□ -1.07
VPS39-205ENST00000562258 C4orf36Q96KX1 117 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 C1orf198Q9H425 327 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 OSGIN2Q9Y236 505 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 A0A1B0GTH9 108 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 VAMP5O95183 116 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 ANKRD34CP0C6C1 535 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 PGAM2P15259 253 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 F8A1P23610 371 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 SCRN3Q0VDG4 424 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 FUT7Q11130 342 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 CEACAM16Q2WEN9 425 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 ACSM5Q6NUN0 579 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 OR5AS1Q8N127 324 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 OR5D18Q8NGL1 313 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 NRG4Q8WWG1 115 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 HOXB13Q92826 284 aaPredicted RBP8.37□□□□□ -1.07
VPS39-205ENST00000562258 PAPOLGQ9BWT3 736 aaKnown RBP8.37□□□□□ -1.07
VPS39-205ENST00000562258 FLRT3Q9NZU0 649 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 NDRG3Q9UGV2 375 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 RNF6Q9Y252 685 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 C7orf72A4D263 438 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 C17orf51A8MQB3 221 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 KIAA0513O60268 411 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 ALPLP05186 524 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 HIST1H1CP16403 213 aaKnown RBP8.37□□□□□ -1.07
VPS39-205ENST00000562258 NAGAP17050 411 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 ZNF91Q05481 1191 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 LY6DQ14210 128 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 MEP1BQ16820 701 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 CD163Q86VB7 1156 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 GPALPP1Q8IXQ4 340 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 FAM46BQ96A09 425 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 CRELD1Q96HD1 420 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 IFT46Q9NQC8 304 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 DIABLOQ9NR28 239 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 MRPL39Q9NYK5 338 aaKnown RBP8.37□□□□□ -1.07
VPS39-205ENST00000562258 TAS2R16Q9NYV7 291 aa8.37□□□□□ -1.07
VPS39-205ENST00000562258 CENPVL1A0A0U1RR11 272 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 ZNF814B7Z6K7 855 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 CCRL2O00421 344 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 MTRF1O75570 445 aaKnown RBP8.36□□□□□ -1.07
VPS39-205ENST00000562258 LYZL6O75951 148 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 ERCC1P07992 297 aaPredicted RBP8.36□□□□□ -1.07
VPS39-205ENST00000562258 SP1P08047 785 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 BMP4P12644 408 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 GALNSP34059 522 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 RPL27P61353 136 aaKnown RBP8.36□□□□□ -1.07
VPS39-205ENST00000562258 PCBD1P61457 104 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 MFAP5Q13361 173 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 FGFBP1Q14512 234 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 ANKRD16Q6P6B7 361 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 NPSR1Q6W5P4 371 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 OR5AK2Q8NH90 309 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 PDCD5O14737 125 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 TIMM8AO60220 97 aaPredicted RBP8.36□□□□□ -1.07
VPS39-205ENST00000562258 MT-ATP6P00846 226 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 CNR1P21554 472 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 EPHA2P29317 976 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 NUBP1P53384 320 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 POU4F2Q12837 409 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 COL19A1Q14993 1142 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 MAD2L1BPQ15013 274 aaPredicted RBP8.36□□□□□ -1.07
VPS39-205ENST00000562258 MEPCEQ7L2J0 689 aaKnown RBP8.36□□□□□ -1.07
VPS39-205ENST00000562258 DCXRQ7Z4W1 244 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 SULF2Q8IWU5 870 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms