RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 DDOQ99489 341 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 PTDSS2Q9BVG9 487 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 SF3B5Q9BWJ5 86 aaKnown RBP6.79□□□□□ -1.32
VPS39-204ENST00000561818 CDADC1Q9BWV3 514 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 RPRD1BQ9NQG5 326 aaKnown RBP6.79□□□□□ -1.32
VPS39-204ENST00000561818 FSCN3Q9NQT6 498 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 KLHL1Q9NR64 748 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 QPCTLQ9NXS2 382 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 ABRACLQ9P1F3 81 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 CKLFQ9UBR5 152 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 IL20RAQ9UHF4 553 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 DKKL1Q9UK85 242 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 ZNF281Q9Y2X9 895 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 SF3B6Q9Y3B4 125 aaKnown RBP6.79□□□□□ -1.32
VPS39-204ENST00000561818 IGHV3-20A0A0C4DH32 117 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 TRBV2A0A0J9YWF9 115 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 FTCDNL1E5RQL4 147 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 J3QLW9 94 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 GNB5O14775 395 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 RGS5O15539 181 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 ARHGEF9O43307 516 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 SC5DO75845 299 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 CDRT1O95170 752 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 SLC2A10O95528 541 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 LIFP15018 202 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 ZNF19P17023 458 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 ZNF43P17038 809 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 CSRP1P21291 193 aaKnown RBP6.78□□□□□ -1.32
VPS39-204ENST00000561818 AHCYP23526 432 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 RBMS1P29558 406 aaKnown RBP6.78□□□□□ -1.32
VPS39-204ENST00000561818 PYCR1P32322 319 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 GDI2P50395 445 aaKnown RBP6.78□□□□□ -1.32
VPS39-204ENST00000561818 EFNA3P52797 238 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 RAC1P63000 192 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 MRPS10P82664 201 aaKnown RBP6.78□□□□□ -1.32
VPS39-204ENST00000561818 PITPNAQ00169 270 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 HSF1Q00613 529 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 SCN1BQ07699 218 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 FOXF1Q12946 379 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 RIN1Q13671 783 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 TRIP6Q15654 476 aaKnown RBP6.78□□□□□ -1.32
VPS39-204ENST00000561818 STK11Q15831 433 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 ACKR1Q16570 336 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 ABHD17BQ5VST6 288 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 TIGD3Q6B0B8 471 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 C22orf42Q6IC83 251 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 XKRXQ6PP77 449 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 BCDIN3DQ7Z5W3 292 aaKnown RBP6.78□□□□□ -1.32
VPS39-204ENST00000561818 CCDC190Q86UF4 302 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 CDC20BQ86Y33 519 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 MARCH9Q86YJ5 346 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 TIGD4Q8IY51 512 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 ZNF679Q8IYX0 411 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 SYT14Q8NB59 555 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 CYB561A3Q8NBI2 242 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 BBS1Q8NFJ9 593 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 OR10H5Q8NGA6 315 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 OR6X1Q8NH79 312 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 OTOSQ8NHW6 89 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 ZNF417Q8TAU3 575 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 GPR148Q8TDV2 347 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 CT55Q8WUE5 264 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 RNF166Q96A37 237 aaPredicted RBP6.78□□□□□ -1.32
VPS39-204ENST00000561818 SLC25A36Q96CQ1 311 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 Q96M85 177 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 OXGR1Q96P68 337 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 MOGAT1Q96PD6 335 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 TSPAN32Q96QS1 320 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 ZNF587Q96SQ5 575 aaPredicted RBP6.78□□□□□ -1.32
VPS39-204ENST00000561818 ZNF649Q9BS31 505 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 RNF32Q9H0A6 362 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 ZNF160Q9HCG1 818 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 SH2D2AQ9NP31 389 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 SNTG1Q9NSN8 517 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 TOR4AQ9NXH8 423 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 TAS2R16Q9NYV7 291 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 TAS2R5Q9NYW4 299 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 GNG8Q9UK08 70 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 ZNF346Q9UL40 294 aaKnown RBP6.78□□□□□ -1.32
VPS39-204ENST00000561818 RCE1Q9Y256 329 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 ADAM18Q9Y3Q7 739 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 PRUNE2Q8WUY3 3088 aa6.78□□□□□ -1.32
VPS39-204ENST00000561818 FER1L5A0AVI2 2057 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 SLC22A23A1A5C7 686 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 MEGF11A6BM72 1044 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 OR6C68A6NDL8 312 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 ACOD1A6NK06 481 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 AQP7P3A6NL99 342 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 ZNF726A6NNF4 738 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 NOTOA8MTQ0 251 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 OIP5O43482 229 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 PRKNO60260 465 aaPredicted RBP6.77□□□□□ -1.33
VPS39-204ENST00000561818 RAD1O60671 282 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 SCGNO76038 276 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 HLA-DQA2P01906 255 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 OCM2P0CE71 109 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 OCMP0CE72 109 aaPredicted RBP6.77□□□□□ -1.33
VPS39-204ENST00000561818 UBCP0CG48 685 aaKnown RBP6.77□□□□□ -1.33
VPS39-204ENST00000561818 ALOX5APP20292 161 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 RAB3BP20337 219 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms