RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 LSM11P83369 360 aaKnown RBP eCLIP15.35■□□□□ 0.05
HDDC3-205ENST00000559898 GUCY1A3Q02108 690 aa15.35■□□□□ 0.05
HDDC3-205ENST00000559898 TMEM249Q2WGJ8 235 aa15.35■□□□□ 0.05
HDDC3-205ENST00000559898 SNX32Q86XE0 403 aa15.35■□□□□ 0.05
HDDC3-205ENST00000559898 LRRC58Q96CX6 371 aa15.35■□□□□ 0.05
HDDC3-205ENST00000559898 ZNF583Q96ND8 569 aa15.35■□□□□ 0.05
HDDC3-205ENST00000559898 VRK1Q99986 396 aaPredicted RBP15.35■□□□□ 0.05
HDDC3-205ENST00000559898 MRASO14807 208 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 CD79AP11912 226 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 FUT1P19526 365 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 OR1E2P47887 323 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 ARFIP2P53365 341 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 UGT2B15P54855 530 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 CHRNB3Q05901 458 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 RUNX1T1Q06455 604 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 SWT1Q5T5J6 900 aaKnown RBP15.34■□□□□ 0.05
HDDC3-205ENST00000559898 METTL21CQ5VZV1 264 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 KRT80Q6KB66 452 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 ZNF813Q6ZN06 617 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 CCDC80Q76M96 950 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 PXKQ7Z7A4 578 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 PATL1Q86TB9 770 aaKnown RBP15.34■□□□□ 0.05
HDDC3-205ENST00000559898 CARM1Q86X55 608 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 CDK20Q8IZL9 346 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 SVOPLQ8N434 492 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 POU5F2Q8N7G0 328 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 ANKK1Q8NFD2 765 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 TNFRSF13CQ96RJ3 184 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 KCNS3Q9BQ31 491 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 ZNF426Q9BUY5 554 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 SH3GLB1Q9Y371 365 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 NOX1Q9Y5S8 564 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 PMF1-BGLAPU3KQ54 211 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 SVEP1Q4LDE5 3571 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 MALRD1Q5VYJ5 2156 aa15.34■□□□□ 0.05
HDDC3-205ENST00000559898 TRAPPC13A5PLN9 417 aa15.33■□□□□ 0.04
HDDC3-205ENST00000559898 VWC2LB2RUY7 222 aa15.33■□□□□ 0.04
HDDC3-205ENST00000559898 PIP5K1CO60331 668 aa15.33■□□□□ 0.04
HDDC3-205ENST00000559898 IGHV4-31P0DP07 118 aa15.33■□□□□ 0.04
HDDC3-205ENST00000559898 HOXB1P14653 301 aaPredicted RBP15.33■□□□□ 0.04
HDDC3-205ENST00000559898 C3orf36Q3SXR2 165 aa15.33■□□□□ 0.04
HDDC3-205ENST00000559898 C6orf52Q5T4I8 152 aa15.33■□□□□ 0.04
HDDC3-205ENST00000559898 TTC33Q6PID6 262 aaPredicted RBP15.33■□□□□ 0.04
HDDC3-205ENST00000559898 LRFN4Q6PJG9 635 aa15.33■□□□□ 0.04
HDDC3-205ENST00000559898 SLC35D2Q76EJ3 337 aa15.33■□□□□ 0.04
HDDC3-205ENST00000559898 OR6N1Q8NGY5 312 aa15.33■□□□□ 0.04
HDDC3-205ENST00000559898 SLC26A7Q8TE54 656 aa15.33■□□□□ 0.04
HDDC3-205ENST00000559898 TMEM255BQ8WV15 326 aa15.33■□□□□ 0.04
HDDC3-205ENST00000559898 C10orf82Q8WW14 230 aa15.33■□□□□ 0.04
HDDC3-205ENST00000559898 TMEM54Q969K7 222 aa15.33■□□□□ 0.04
HDDC3-205ENST00000559898 LRR1Q96L50 414 aa15.33■□□□□ 0.04
HDDC3-205ENST00000559898 SIKE1Q9BRV8 207 aa15.33■□□□□ 0.04
HDDC3-205ENST00000559898 SOX7Q9BT81 388 aa15.33■□□□□ 0.04
HDDC3-205ENST00000559898 ULBP2Q9BZM5 246 aa15.33■□□□□ 0.04
HDDC3-205ENST00000559898 PCDHAC1Q9H158 963 aa15.33■□□□□ 0.04
HDDC3-205ENST00000559898 PLK3Q9H4B4 646 aa15.33■□□□□ 0.04
HDDC3-205ENST00000559898 C20orf141Q9NUB4 165 aa15.33■□□□□ 0.04
HDDC3-205ENST00000559898 ARMCX1Q9P291 453 aa15.33■□□□□ 0.04
HDDC3-205ENST00000559898 SH3PXD2BA1X283 911 aa15.32■□□□□ 0.04
HDDC3-205ENST00000559898 ZNF726A6NNF4 738 aa15.32■□□□□ 0.04
HDDC3-205ENST00000559898 hCG_2039718K7EN88 272 aa15.32■□□□□ 0.04
HDDC3-205ENST00000559898 TP53P04637 393 aaPredicted RBP15.32■□□□□ 0.04
HDDC3-205ENST00000559898 ASAH2BP0C7U1 165 aa15.32■□□□□ 0.04
HDDC3-205ENST00000559898 ZNF14P17017 642 aaPredicted RBP15.32■□□□□ 0.04
HDDC3-205ENST00000559898 ZNF16P17020 682 aaPredicted RBP15.32■□□□□ 0.04
HDDC3-205ENST00000559898 MYBPC1Q00872 1141 aa15.32■□□□□ 0.04
HDDC3-205ENST00000559898 LOXL1Q08397 574 aaPredicted RBP15.32■□□□□ 0.04
HDDC3-205ENST00000559898 PIN1Q13526 163 aaPredicted RBP15.32■□□□□ 0.04
HDDC3-205ENST00000559898 CARTPTQ16568 116 aa15.32■□□□□ 0.04
HDDC3-205ENST00000559898 C1QTNF12Q5T7M4 302 aa15.32■□□□□ 0.04
HDDC3-205ENST00000559898 DEF8Q6ZN54 512 aa15.32■□□□□ 0.04
HDDC3-205ENST00000559898 SPATA21Q7Z572 469 aa15.32■□□□□ 0.04
HDDC3-205ENST00000559898 LRP11Q86VZ4 500 aa15.32■□□□□ 0.04
HDDC3-205ENST00000559898 MEX3DQ86XN8 651 aaKnown RBP15.32■□□□□ 0.04
HDDC3-205ENST00000559898 ZNF584Q8IVC4 421 aa15.32■□□□□ 0.04
HDDC3-205ENST00000559898 SKA3Q8IX90 412 aa15.32■□□□□ 0.04
HDDC3-205ENST00000559898 ARIH2OSQ8N7S6 290 aa15.32■□□□□ 0.04
HDDC3-205ENST00000559898 FAM169BQ8N8A8 192 aa15.32■□□□□ 0.04
HDDC3-205ENST00000559898 NUP37Q8NFH4 326 aa15.32■□□□□ 0.04
HDDC3-205ENST00000559898 FOXN4Q96NZ1 517 aa15.32■□□□□ 0.04
HDDC3-205ENST00000559898 ZNF317Q96PQ6 595 aaPredicted RBP15.32■□□□□ 0.04
HDDC3-205ENST00000559898 DOK1Q99704 481 aa15.32■□□□□ 0.04
HDDC3-205ENST00000559898 FOXB1Q99853 325 aa15.32■□□□□ 0.04
HDDC3-205ENST00000559898 POFUT2Q9Y2G5 429 aa15.32■□□□□ 0.04
HDDC3-205ENST00000559898 RTTNQ86VV8 2226 aa15.31■□□□□ 0.04
HDDC3-205ENST00000559898 IGHV4-61A0A0C4DH41 118 aa15.31■□□□□ 0.04
HDDC3-205ENST00000559898 B9A039 149 aa15.31■□□□□ 0.04
HDDC3-205ENST00000559898 LYNX1G3V0Z9 82 aa15.31■□□□□ 0.04
HDDC3-205ENST00000559898 RNF13O43567 381 aa15.31■□□□□ 0.04
HDDC3-205ENST00000559898 AKAP8O43823 692 aaKnown RBP15.31■□□□□ 0.04
HDDC3-205ENST00000559898 MT-ATP6P00846 226 aa15.31■□□□□ 0.04
HDDC3-205ENST00000559898 VIMP08670 466 aaKnown RBP15.31■□□□□ 0.04
HDDC3-205ENST00000559898 LYNX1P0DP58 116 aa15.31■□□□□ 0.04
HDDC3-205ENST00000559898 ARR3P36575 388 aa15.31■□□□□ 0.04
HDDC3-205ENST00000559898 GIPRP48546 466 aa15.31■□□□□ 0.04
HDDC3-205ENST00000559898 PTDSS1P48651 473 aaKnown RBP15.31■□□□□ 0.04
HDDC3-205ENST00000559898 CSNK1A1P48729 337 aa15.31■□□□□ 0.04
HDDC3-205ENST00000559898 SNRPD2P62316 118 aaKnown RBP15.31■□□□□ 0.04
HDDC3-205ENST00000559898 ZP4Q12836 540 aa15.31■□□□□ 0.04
HDDC3-205ENST00000559898 SNTB2Q13425 540 aaKnown RBP15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms