RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 SLC25A44Q96H78 314 aaPredicted RBP8.92□□□□□ -0.98
USP3-216ENST00000559873 ZNF570Q96NI8 536 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 TNFRSF13CQ96RJ3 184 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 GPX7Q96SL4 187 aaPredicted RBP8.92□□□□□ -0.98
USP3-216ENST00000559873 FEVQ99581 238 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 IFT27Q9BW83 186 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 TEX12Q9BXU0 123 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 HDHD5Q9BXW7 423 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 LINC00470Q9BZP3 86 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 UCK2Q9BZX2 261 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 GABARAPL1Q9H0R8 117 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 OR52D1Q9H346 318 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 MCCC2Q9HCC0 563 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 TBC1D23Q9NUY8 699 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 GALNT8Q9NY28 637 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 TAS2R16Q9NYV7 291 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 GRHPRQ9UBQ7 328 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 SLC35F4A4IF30 521 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 ANKRD65E5RJM6 399 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 H3BNX3 289 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 RRP9O43818 475 aaKnown RBP8.91□□□□□ -0.98
USP3-216ENST00000559873 PTP4A3O75365 173 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 GASTP01350 101 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 RNF224P0DH78 156 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 HLA-DOBP13765 273 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 APEHP13798 732 aaKnown RBP8.91□□□□□ -0.98
USP3-216ENST00000559873 PPP3CBP16298 524 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 PSMB1P20618 241 aaKnown RBP8.91□□□□□ -0.98
USP3-216ENST00000559873 NOS3P29474 1203 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 RPL27P61353 136 aaKnown RBP8.91□□□□□ -0.98
USP3-216ENST00000559873 MELKQ14680 651 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 STK11Q15831 433 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 RFX4Q33E94 735 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 TSPO2Q5TGU0 170 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 HMBOX1Q6NT76 420 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 ZNF474Q6S9Z5 364 aaPredicted RBP8.91□□□□□ -0.98
USP3-216ENST00000559873 CD300LDQ6UXZ3 194 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 TMEM123Q8N131 208 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 GABRG1Q8N1C3 465 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 PQLC1Q8N2U9 271 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 ZIC4Q8N9L1 334 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 ZNF610Q8N9Z0 462 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 ICA1LQ8NDH6 482 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 C1orf162Q8NEQ5 155 aaPredicted RBP8.91□□□□□ -0.98
USP3-216ENST00000559873 STEAP2Q8NFT2 490 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 ASB10Q8WXI3 467 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 LRR1Q96L50 414 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 ALKBH3Q96Q83 286 aaPredicted RBP8.91□□□□□ -0.98
USP3-216ENST00000559873 OR2M2Q96R28 347 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 ALG12Q9BV10 488 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 KATNB1Q9BVA0 655 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 ULBP2Q9BZM5 246 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 OR10A4Q9H209 315 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 SEMA6AQ9H2E6 1030 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 PRSS50Q9UI38 385 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 BAIAP2Q9UQB8 552 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 POFUT2Q9Y2G5 429 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 GPR52Q9Y2T5 361 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 DOPEY2Q9Y3R5 2298 aa8.91□□□□□ -0.98
USP3-216ENST00000559873 CIB4A0PJX0 185 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 A1L4Q6 167 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 C16orf97H3BN30 126 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 H3BN98 237 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 IMPA2O14732 288 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 IDH3BO43837 385 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 ZNF432O94892 652 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 IGHV3-9P01782 118 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 ACADSP16219 412 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 CDH2P19022 906 aaPredicted RBP8.9□□□□□ -0.98
USP3-216ENST00000559873 COX5AP20674 150 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 MPGP29372 298 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 SDHAP31040 664 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 ACVR1BP36896 505 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 ERVK-25P63136 954 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 TFF3Q07654 80 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 CD47Q08722 323 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 FAPQ12884 760 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 CAMK2DQ13557 499 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 KRR1Q13601 381 aaKnown RBP8.9□□□□□ -0.98
USP3-216ENST00000559873 CDSNQ15517 529 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 ARMC4Q5T2S8 1044 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 C1QTNF12Q5T7M4 302 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 CARD17Q5XLA6 110 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 OR7E24Q6IFN5 339 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 FAHD1Q6P587 224 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 KLHL24Q6TFL4 600 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.9□□□□□ -0.98
USP3-216ENST00000559873 TMEM179BQ7Z7N9 219 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 AMIGO2Q86SJ2 522 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 ADCK1Q86TW2 530 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 IGFN1Q86VF2 1251 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 JAZF1Q86VZ6 243 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 PARP8Q8N3A8 854 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 C17orf78Q8N4C9 275 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 ARIH2OSQ8N7S6 290 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 LRRC75AQ8NAA5 344 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 OR2T33Q8NG76 320 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 MAGEE2Q8TD90 523 aaPredicted RBP8.9□□□□□ -0.98
USP3-216ENST00000559873 TXNDC15Q96J42 360 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 TSPAN32Q96QS1 320 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms