RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 RLN3Q8WXF3 142 aa1.89□□□□□ -2.11
VPS13C-207ENST00000558919 TRIM44Q96DX7 344 aaPredicted RBP1.89□□□□□ -2.11
VPS13C-207ENST00000558919 SENP8Q96LD8 212 aa1.89□□□□□ -2.11
VPS13C-207ENST00000558919 OR2A5Q96R48 311 aa1.89□□□□□ -2.11
VPS13C-207ENST00000558919 CLCC1Q96S66 551 aa1.89□□□□□ -2.11
VPS13C-207ENST00000558919 LRRN3Q9H3W5 708 aa1.89□□□□□ -2.11
VPS13C-207ENST00000558919 RPP21Q9H633 154 aaKnown RBP1.89□□□□□ -2.11
VPS13C-207ENST00000558919 LY9Q9HBG7 655 aa1.89□□□□□ -2.11
VPS13C-207ENST00000558919 PALMDQ9NP74 551 aa1.89□□□□□ -2.11
VPS13C-207ENST00000558919 SLCO1B3Q9NPD5 702 aa1.89□□□□□ -2.11
VPS13C-207ENST00000558919 SIRT7Q9NRC8 400 aa1.89□□□□□ -2.11
VPS13C-207ENST00000558919 SPATA7Q9P0W8 599 aa1.89□□□□□ -2.11
VPS13C-207ENST00000558919 ZNF629Q9UEG4 869 aaPredicted RBP1.89□□□□□ -2.11
VPS13C-207ENST00000558919 MARCOQ9UEW3 520 aaPredicted RBP1.89□□□□□ -2.11
VPS13C-207ENST00000558919 GGA2Q9UJY4 613 aa1.89□□□□□ -2.11
VPS13C-207ENST00000558919 MRPS7Q9Y2R9 242 aaKnown RBP1.89□□□□□ -2.11
VPS13C-207ENST00000558919 MEMO1Q9Y316 297 aa1.89□□□□□ -2.11
VPS13C-207ENST00000558919 F11RQ9Y624 299 aaKnown RBP1.89□□□□□ -2.11
VPS13C-207ENST00000558919 KIF16BQ96L93 1317 aa1.89□□□□□ -2.11
VPS13C-207ENST00000558919 HSD17B6O14756 317 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 MAGEB3O15480 346 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 POLR2DO15514 142 aaKnown RBP1.88□□□□□ -2.11
VPS13C-207ENST00000558919 PRKAB2O43741 272 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 RHOBTB1O94844 696 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 RCBTB2O95199 551 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 RPA2P15927 270 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 CELP19835 753 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 PAX7P23759 505 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 NPY1RP25929 384 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 HMGB2P26583 209 aaKnown RBP1.88□□□□□ -2.11
VPS13C-207ENST00000558919 GNA11P29992 359 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 TTLL9Q3SXZ7 439 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 TTC23Q5W5X9 447 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 FAM92BQ6ZTR7 304 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 UTS2BQ765I0 119 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 PPP1R42Q7Z4L9 355 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 ZADH2Q8N4Q0 377 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 ACOT4Q8N9L9 421 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 OR10G4Q8NGN3 311 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 OR5W2Q8NH69 310 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 SMARCD2Q92925 531 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 ERP44Q9BS26 406 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 OSBPL11Q9BXB4 747 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 UFSP2Q9NUQ7 469 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 EXD2Q9NVH0 621 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 CD84Q9UIB8 345 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 ZNF222Q9UK12 451 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 MMP17Q9ULZ9 603 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 SNX6Q9UNH7 406 aa1.88□□□□□ -2.11
VPS13C-207ENST00000558919 MRPS33Q9Y291 106 aaKnown RBP1.88□□□□□ -2.11
VPS13C-207ENST00000558919 RPAP1Q9BWH6 1393 aaPredicted RBP1.87□□□□□ -2.11
VPS13C-207ENST00000558919 WDR62O43379 1518 aa1.87□□□□□ -2.11
VPS13C-207ENST00000558919 IGHV5-51A0A0C4DH38 117 aa1.87□□□□□ -2.11
VPS13C-207ENST00000558919 ZNF705GA8MUZ8 300 aaPredicted RBP1.87□□□□□ -2.11
VPS13C-207ENST00000558919 INS-IGF2F8WCM5 200 aa1.87□□□□□ -2.11
VPS13C-207ENST00000558919 K7EQM0 130 aa1.87□□□□□ -2.11
VPS13C-207ENST00000558919 PRRG1O14668 218 aa1.87□□□□□ -2.11
VPS13C-207ENST00000558919 MED7O43513 233 aa1.87□□□□□ -2.11
VPS13C-207ENST00000558919 DIRAS1O95057 198 aa1.87□□□□□ -2.11
VPS13C-207ENST00000558919 DCNP07585 359 aaKnown RBP1.87□□□□□ -2.11
VPS13C-207ENST00000558919 IQCF3P0C7M6 154 aa1.87□□□□□ -2.11
VPS13C-207ENST00000558919 UBTFL1P0CB47 393 aaPredicted RBP1.87□□□□□ -2.11
VPS13C-207ENST00000558919 GDI1P31150 447 aa1.87□□□□□ -2.11
VPS13C-207ENST00000558919 IFNAR2P48551 515 aa1.87□□□□□ -2.11
VPS13C-207ENST00000558919 STK11Q15831 433 aa1.87□□□□□ -2.11
VPS13C-207ENST00000558919 ANKDD1AQ495B1 522 aa1.87□□□□□ -2.11
VPS13C-207ENST00000558919 ZBED5Q49AG3 693 aa1.87□□□□□ -2.11
VPS13C-207ENST00000558919 CFAP157Q5JU67 520 aa1.87□□□□□ -2.11
VPS13C-207ENST00000558919 ATAD3BQ5T9A4 648 aa1.87□□□□□ -2.11
VPS13C-207ENST00000558919 KRTAP5-7Q6L8G8 165 aa1.87□□□□□ -2.11
VPS13C-207ENST00000558919 FAM43BQ6ZT52 329 aaPredicted RBP1.87□□□□□ -2.11
VPS13C-207ENST00000558919 PIANPQ8IYJ0 282 aa1.87□□□□□ -2.11
VPS13C-207ENST00000558919 MYOCDQ8IZQ8 938 aa1.87□□□□□ -2.11
VPS13C-207ENST00000558919 TMEM123Q8N131 208 aa1.87□□□□□ -2.11
VPS13C-207ENST00000558919 TRMT10AQ8TBZ6 339 aaKnown RBP1.87□□□□□ -2.11
VPS13C-207ENST00000558919 CXorf40BQ96DE9 158 aa1.87□□□□□ -2.11
VPS13C-207ENST00000558919 ZNF607Q96SK3 696 aa1.87□□□□□ -2.11
VPS13C-207ENST00000558919 CRACR2AQ9BSW2 395 aa1.87□□□□□ -2.11
VPS13C-207ENST00000558919 MRPL47Q9HD33 250 aaKnown RBP1.87□□□□□ -2.11
VPS13C-207ENST00000558919 TMCC3Q9ULS5 477 aa1.87□□□□□ -2.11
VPS13C-207ENST00000558919 TNKS1BP1Q9C0C2 1729 aaKnown RBP1.86□□□□□ -2.11
VPS13C-207ENST00000558919 A0A1B0GVX0 72 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 A0A1W2PP18 115 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 OR5B21A6NL26 309 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 H0YCG3 227 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 H0YHG0 523 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 GMFGO60234 142 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 RAMP3O60896 148 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 SPAG6O75602 509 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 UPK3AO75631 287 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 UGT2B4P06133 528 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 OPRD1P41143 372 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 PRPHP41219 470 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 PLD1Q13393 1074 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 AQP6Q13520 282 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 PRSS8Q16651 343 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 DMRTC1Q5HYR2 192 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 FBXW9Q5XUX1 488 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 ZNF880Q6PDB4 577 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 SHISA6Q6ZSJ9 500 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms