RNA–Protein interactions for RNA: ENST00000558155.1

SPG11-208, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-208	ENST00000558155	UBL3	O95164	117 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	AHSA1	O95433	338 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	CPSF4	O95639	269 aa	Known RBP	4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	PTH	P01270	115 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	LCK	P06239	509 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	DBI	P07108	87 aa	Known RBP	4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	PNMT	P11086	282 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	ZNF250	P15622	560 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	NCF2	P19878	526 aa	Predicted RBP	4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	DRD4	P21917	467 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	CRHR1	P34998	444 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	CHI3L1	P36222	383 aa	Predicted RBP	4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	GIPR	P48546	466 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	ANXA11	P50995	505 aa	Known RBP	4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	CLDN8	P56748	225 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	KLF3	P57682	345 aa	Predicted RBP	4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	TXNL4A	P83876	142 aa	Known RBP	4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	ZNF154	Q13106	437 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	MAD2L1	Q13257	205 aa	Predicted RBP	4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	HLX	Q14774	488 aa	Predicted RBP	4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	RAB39A	Q14964	217 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	TST	Q16762	297 aa	Known RBP	4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	ALKBH6	Q3KRA9	238 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	UGT3A2	Q3SY77	523 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	C6orf136	Q5SQH8	315 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	ANXA8L1	Q5VT79	327 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	FAM205BP	Q63HN1	556 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	KANK2	Q63ZY3	851 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	OLFML2A	Q68BL7	652 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	OR4F3	Q6IEY1	312 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	SYT10	Q6XYQ8	523 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	LRRC74B	Q6ZQY2	392 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	NET1	Q7Z628	596 aa	Predicted RBP	4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	HMGN2P46	Q86SG4	172 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	RIMKLA	Q8IXN7	391 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	PEX5L	Q8IYB4	626 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	C20orf196	Q8IYI0	205 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	KRTCAP2	Q8N6L1	136 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	FNDC5	Q8NAU1	212 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	CPEB3	Q8NE35	698 aa	Known RBP	4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	DEFB108B	Q8NET1	73 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	OR52E2	Q8NGJ4	325 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	OR4A15	Q8NGL6	344 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	OR1J2	Q8NGS2	313 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	ZNF519	Q8TB69	540 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	TWIST2	Q8WVJ9	160 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	LRR1	Q96L50	414 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	C1orf147	Q96MC9	270 aa	Predicted RBP	4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	ZNF48	Q96MX3	618 aa	Predicted RBP	4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	ZNF75A	Q96N20	296 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	FAM210A	Q96ND0	272 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	TRNT1	Q96Q11	434 aa	Known RBP	4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	FMO2	Q99518	471 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	CITED1	Q99966	193 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	RBM4B	Q9BQ04	359 aa	Known RBP	4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	SLC30A2	Q9BRI3	323 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	C1orf50	Q9BV19	199 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	GATA5	Q9BWX5	397 aa	Predicted RBP	4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	RSPO3	Q9BXY4	272 aa	Predicted RBP	4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	EGLN1	Q9GZT9	426 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	LRMDA	Q9H2I8	198 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	ARMC7	Q9H6L4	198 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	SAP30L	Q9HAJ7	183 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	UBAP1	Q9NZ09	502 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	LEF1	Q9UJU2	399 aa	Predicted RBP	4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	PURG	Q9UJV8	347 aa	Known RBP	4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	EMCN	Q9ULC0	261 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	ZNF232	Q9UNY5	417 aa		4.4	□□□□□ -1.71
SPG11-208	ENST00000558155	DOCK11	Q5JSL3	2073 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	IGLV3-9	A0A075B6K5	115 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155		A0A1W2PPM1	405 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	CLPSL1	A2RUU4	121 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	SLC22A31	A6NKX4	558 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	HMGN4	O00479	90 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	FRS3	O43559	492 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	PLIN3	O60664	434 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	NPIPB7	O75200	414 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	SEC14L2	O76054	403 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	GPANK1	O95872	356 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	CLPTM1	O96005	669 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	NGF	P01138	241 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	IGHM	P01871	453 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	SERPINA5	P05154	406 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	ABHD2	P08910	425 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	SBK2	P0C263	348 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	GKN3P	P0CG01	181 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	FAM157B	P0CG42	384 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	NR2F1	P10589	423 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	G6PD	P11413	515 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	ZNF12	P17014	697 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	GCA	P28676	217 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	LIPA	P38571	399 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	ACAA2	P42765	397 aa	Known RBP	4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	RPS5	P46782	204 aa	Known RBP	4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	ZNF81	P51508	661 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	AQP5	P55064	265 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	UCP2	P55851	309 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	RAG2	P55895	527 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	PLAUR	Q03405	335 aa		4.39	□□□□□ -1.71
SPG11-208	ENST00000558155	EMX2	Q04743	252 aa		4.39	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 35 ms