RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 EXD3Q8N9H8 876 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 ZBTB44Q8NCP5 570 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 TMEM52Q8NDY8 209 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 OR14C36Q8NHC7 312 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 CXorf58Q96LI9 332 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 ADAD1Q96M93 576 aaKnown RBP14.84□□□□□ -0.03
SHMT2-232ENST00000557487 ZDHHC4Q9NPG8 344 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 TMEM74BQ9NUR3 256 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 GDE1Q9NZC3 331 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 CDV3Q9UKY7 258 aaKnown RBP14.84□□□□□ -0.03
SHMT2-232ENST00000557487 HIF3AQ9Y2N7 669 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 TMEM14AQ9Y6G1 99 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 CDH23Q9H251 3354 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 SLC22A23A1A5C7 686 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 BLACEA4D250 179 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 GGT3PA6NGU5 568 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 D6RAR5 112 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 SULT1C2O00338 296 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 LPLP06858 475 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 CD14P08571 375 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 ADRA2CP18825 462 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 CSRP1P21291 193 aaKnown RBP14.84□□□□□ -0.03
SHMT2-232ENST00000557487 ERVK-25P63136 954 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 LIPNQ5VXI9 398 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 TSSK4Q6SA08 328 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 TMEM184AQ6ZMB5 413 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 NUP54Q7Z3B4 507 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 CDC20BQ86Y33 519 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 OR4C16Q8NGL9 310 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 BAHD1Q8TBE0 780 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-232ENST00000557487 GPR148Q8TDV2 347 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 HLA-CQ95604 372 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 TSPAN10Q9H1Z9 355 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-232ENST00000557487 CCDC86Q9H6F5 360 aaKnown RBP14.84□□□□□ -0.03
SHMT2-232ENST00000557487 Q9N2J8 555 aa14.84□□□□□ -0.03
SHMT2-232ENST00000557487 MRM2Q9UI43 246 aaKnown RBP14.84□□□□□ -0.03
SHMT2-232ENST00000557487 FXYD6-FXYD2A0A087WZ82 144 aa14.83□□□□□ -0.04
SHMT2-232ENST00000557487 UBBP0CG47 229 aa14.83□□□□□ -0.04
SHMT2-232ENST00000557487 UBCP0CG48 685 aaKnown RBP14.83□□□□□ -0.04
SHMT2-232ENST00000557487 S1PR1P21453 382 aa14.83□□□□□ -0.04
SHMT2-232ENST00000557487 SDHBP21912 280 aa14.83□□□□□ -0.04
SHMT2-232ENST00000557487 H2BFSP57053 126 aa14.83□□□□□ -0.04
SHMT2-232ENST00000557487 RPS27AP62979 156 aaKnown RBP14.83□□□□□ -0.04
SHMT2-232ENST00000557487 UBA52P62987 128 aaKnown RBP14.83□□□□□ -0.04
SHMT2-232ENST00000557487 FGL1Q08830 312 aa14.83□□□□□ -0.04
SHMT2-232ENST00000557487 EIF2B5Q13144 721 aaKnown RBP14.83□□□□□ -0.04
SHMT2-232ENST00000557487 ALKAL2Q6UX46 152 aa14.83□□□□□ -0.04
SHMT2-232ENST00000557487 NHLRC1Q6VVB1 395 aa14.83□□□□□ -0.04
SHMT2-232ENST00000557487 DOK4Q8TEW6 326 aa14.83□□□□□ -0.04
SHMT2-232ENST00000557487 ZDHHC1Q8WTX9 485 aa14.83□□□□□ -0.04
SHMT2-232ENST00000557487 RASD2Q96D21 266 aa14.83□□□□□ -0.04
SHMT2-232ENST00000557487 VSTM2LQ96N03 204 aa14.83□□□□□ -0.04
SHMT2-232ENST00000557487 FXYD6Q9H0Q3 95 aa14.83□□□□□ -0.04
SHMT2-232ENST00000557487 C1orf198Q9H425 327 aa14.83□□□□□ -0.04
SHMT2-232ENST00000557487 FBRSQ9HAH7 460 aa14.83□□□□□ -0.04
SHMT2-232ENST00000557487 APMAPQ9HDC9 416 aa14.83□□□□□ -0.04
SHMT2-232ENST00000557487 MYOZ1Q9NP98 299 aaPredicted RBP14.83□□□□□ -0.04
SHMT2-232ENST00000557487 FRRS1LQ9P0K9 344 aa14.83□□□□□ -0.04
SHMT2-232ENST00000557487 MRPS2Q9Y399 296 aaKnown RBP14.83□□□□□ -0.04
SHMT2-232ENST00000557487 SCN3AQ9NY46 2000 aa14.83□□□□□ -0.04
SHMT2-232ENST00000557487 A0A0D9SG52 128 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 SERINC4A6NH21 518 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 RFPL4AA6NLU0 287 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 OR4C45A6NMZ5 311 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 A8MUA0 341 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 C2orf74A8MZ97 194 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 IDSB3KWA1 339 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 RFPL4AL1F8VTS6 287 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 CDC40O60508 579 aaKnown RBP eCLIP14.82□□□□□ -0.04
SHMT2-232ENST00000557487 SRPX2O60687 465 aaPredicted RBP14.82□□□□□ -0.04
SHMT2-232ENST00000557487 SDC3O75056 442 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 PMS2P2O95744 297 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 EML2O95834 649 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 CSTAP01040 98 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 IGKV1D-16P01601 117 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 RLN1P04808 185 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 ZNF35P13682 527 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 SDHAP31040 664 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 WASP42768 502 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 TPMTP51580 245 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 MAZP56270 477 aaKnown RBP14.82□□□□□ -0.04
SHMT2-232ENST00000557487 ACTBP60709 375 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 ACTG1P63261 375 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 NFATC4Q14934 902 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 CSRP2Q16527 193 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 SFRP5Q5T4F7 317 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 FAAP20Q6NZ36 180 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 FAM122BQ7Z309 247 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 OR5M1Q8NGP8 315 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 OR1S1Q8NH92 325 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 TNFAIP8L1Q8WVP5 186 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 OR1E3Q8WZA6 343 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 FGF13Q92913 245 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 RIT1Q92963 219 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 UBE2ZQ9H832 354 aaPredicted RBP14.82□□□□□ -0.04
SHMT2-232ENST00000557487 PRDM6Q9NQX0 595 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 ZNF107Q9UII5 783 aaPredicted RBP14.82□□□□□ -0.04
SHMT2-232ENST00000557487 TRANK1O15050 2925 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 A0A1B0GVT2 93 aa14.82□□□□□ -0.04
SHMT2-232ENST00000557487 A6NCN8 305 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms