RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 OR51A7Q8NH64 312 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 OR6X1Q8NH79 312 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 MUCL1Q96DR8 90 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 FAM46AQ96IP4 442 aaKnown RBP11.95□□□□□ -0.5
SHMT2-228ENST00000557302 LRR1Q96L50 414 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 ALPK1Q96QP1 1244 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 FUZQ9BT04 418 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 POLDIP3Q9BY77 421 aaKnown RBP11.95□□□□□ -0.5
SHMT2-228ENST00000557302 CLEC4MQ9H2X3 399 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-228ENST00000557302 MMADHCQ9H3L0 296 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-228ENST00000557302 B3GAT2Q9NPZ5 323 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 SLC7A8Q9UHI5 535 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 AURKCQ9UQB9 309 aa11.95□□□□□ -0.5
SHMT2-228ENST00000557302 ALPK2Q86TB3 2170 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 DHRS12A0PJE2 317 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 DEFB108AA8MXU0 73 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 MCIDASD6RGH6 385 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 RPL36A-HNRNPH2H7BZ11 118 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 M0R3G1 203 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 HRGP04196 525 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 HOXB6P17509 224 aaKnown RBP11.94□□□□□ -0.5
SHMT2-228ENST00000557302 CDH2P19022 906 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-228ENST00000557302 HOXC12P31275 282 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 CSNK1A1P48729 337 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 SH3BGRP55822 239 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-228ENST00000557302 CAMK2DQ13557 499 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 MELKQ14680 651 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 LAPTM4AQ15012 233 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 PPA1Q15181 289 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 ACKR1Q16570 336 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 BEX5Q5H9J7 111 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 LINGO2Q7L985 606 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 LURAP1LQ8IV03 231 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 ADGRG5Q8IZF4 528 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 C17orf78Q8N4C9 275 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 CANT1Q8WVQ1 401 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 ZNF566Q969W8 418 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 PIK3IP1Q96FE7 263 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 SLC25A44Q96H78 314 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-228ENST00000557302 MUS81Q96NY9 551 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 TNFRSF13CQ96RJ3 184 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 NDEL1Q9GZM8 345 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 CRLF2Q9HC73 371 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 GPR35Q9HC97 309 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 NGBQ9NPG2 151 aa11.94□□□□□ -0.5
SHMT2-228ENST00000557302 STX18Q9P2W9 335 aaKnown RBP11.94□□□□□ -0.5
SHMT2-228ENST00000557302 POLQO75417 2590 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 NPIPB13A6NJU9 1138 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 NPIPB4C9JG80 1138 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 TNFRSF11BO00300 401 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 EBAG9O00559 213 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 CDC42EP2O14613 210 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 SIAH2O43255 324 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 KLF4O43474 513 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 OR10H3O60404 316 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 IGHG1P01857 330 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 IFNGR2P38484 337 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 OMPP47874 163 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 LIMS1P48059 325 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 KRTAP10-9P60411 292 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 PRPS1P60891 318 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 FHL1Q13642 323 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 TAF11Q15544 211 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 CEACAM16Q2WEN9 425 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 ZBED5Q49AG3 693 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 OR2T5Q6IEZ7 315 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 KLHL24Q6TFL4 600 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 WDFY1Q8IWB7 410 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 OR1K1Q8NGR3 316 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 OR2T29Q8NH02 315 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 OR52N5Q8NH56 324 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 ASB10Q8WXI3 467 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 RSRC1Q96IZ7 334 aaKnown RBP11.93□□□□□ -0.5
SHMT2-228ENST00000557302 LURAP1Q96LR2 239 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 CHID1Q9BWS9 393 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 ULBP2Q9BZM5 246 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 SLC17A5Q9NRA2 495 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 LYVE1Q9Y5Y7 322 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 SPG11Q96JI7 2443 aa11.93□□□□□ -0.5
SHMT2-228ENST00000557302 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-228ENST00000557302 TCRBV3S1A0A5B6 114 aa11.92□□□□□ -0.5
SHMT2-228ENST00000557302 UNC119BA6NIH7 251 aa11.92□□□□□ -0.5
SHMT2-228ENST00000557302 CENPBD1B2RD01 187 aa11.92□□□□□ -0.5
SHMT2-228ENST00000557302 RPL4P36578 427 aaKnown RBP11.92□□□□□ -0.5
SHMT2-228ENST00000557302 HMGA2P52926 109 aa11.92□□□□□ -0.5
SHMT2-228ENST00000557302 NR1H2P55055 460 aa11.92□□□□□ -0.5
SHMT2-228ENST00000557302 CLRN1P58418 232 aa11.92□□□□□ -0.5
SHMT2-228ENST00000557302 CTXN1P60606 82 aa11.92□□□□□ -0.5
SHMT2-228ENST00000557302 ARF1P84077 181 aaKnown RBP11.92□□□□□ -0.5
SHMT2-228ENST00000557302 TOP3AQ13472 1001 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-228ENST00000557302 TBRG1Q3YBR2 411 aa11.92□□□□□ -0.5
SHMT2-228ENST00000557302 HIKESHIQ53FT3 197 aa11.92□□□□□ -0.5
SHMT2-228ENST00000557302 PHYHD1Q5SRE7 291 aa11.92□□□□□ -0.5
SHMT2-228ENST00000557302 C1QTNF12Q5T7M4 302 aa11.92□□□□□ -0.5
SHMT2-228ENST00000557302 ANKRD16Q6P6B7 361 aa11.92□□□□□ -0.5
SHMT2-228ENST00000557302 ZER1Q7Z7L7 766 aa11.92□□□□□ -0.5
SHMT2-228ENST00000557302 IGFN1Q86VF2 1251 aa11.92□□□□□ -0.5
SHMT2-228ENST00000557302 CDC20BQ86Y33 519 aa11.92□□□□□ -0.5
SHMT2-228ENST00000557302 LINC00471Q8N535 108 aa11.92□□□□□ -0.5
SHMT2-228ENST00000557302 WDR31Q8NA23 367 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms