RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 CSKP41240 450 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 ALDH3B1P43353 468 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 MAGEA1P43355 309 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 CDKN1BP46527 198 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 NAGLUP54802 743 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 ATP5IP56385 69 aaPredicted RBP3.5□□□□□ -1.85
PRPF39-209ENST00000556353 LIPEQ05469 1076 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 BST2Q10589 180 aaKnown RBP3.5□□□□□ -1.85
PRPF39-209ENST00000556353 ABRQ12979 859 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 CEACAM7Q14002 265 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 TSC22D1Q15714 1073 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 FAM83EQ2M2I3 478 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 PARP6Q2NL67 630 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 C9orf64Q5T6V5 341 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 PRAMEF20Q5VT98 475 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 SYPL2Q5VXT5 272 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 DMKNQ6E0U4 476 aaPredicted RBP3.5□□□□□ -1.85
PRPF39-209ENST00000556353 TMEM270Q6UE05 265 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 SYT10Q6XYQ8 523 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 RBM43Q6ZSC3 357 aaKnown RBP3.5□□□□□ -1.85
PRPF39-209ENST00000556353 BIVMQ86UB2 503 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 BHLHE23Q8NDY6 225 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 TRPV3Q8NET8 790 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 OCC1Q8TAD7 63 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 SETD6Q8TBK2 473 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 OR1E3Q8WZA6 343 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 MR1Q95460 341 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 ST6GALNAC6Q969X2 333 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 FAM131CQ96AQ9 280 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 BIRC7Q96CA5 298 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 NSMCE2Q96MF7 247 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 TSNARE1Q96NA8 513 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 ZBTB18Q99592 522 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 PRMT1Q99873 361 aaKnown RBP3.5□□□□□ -1.85
PRPF39-209ENST00000556353 FRMD8P1Q9BZ68 369 aaPredicted RBP3.5□□□□□ -1.85
PRPF39-209ENST00000556353 SLC26A1Q9H2B4 701 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 RHBGQ9H310 441 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 VIPAS39Q9H9C1 493 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 S100A14Q9HCY8 104 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 MED17Q9NVC6 651 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 SOHLH2Q9NX45 425 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 MRPL39Q9NYK5 338 aaKnown RBP3.5□□□□□ -1.85
PRPF39-209ENST00000556353 NDUFA13Q9P0J0 144 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 TRIM10Q9UDY6 481 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 POMT1Q9Y6A1 747 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 ADGRG4Q8IZF6 3080 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 SVILO95425 2214 aa3.5□□□□□ -1.85
PRPF39-209ENST00000556353 OTOGQ6ZRI0 2925 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 POLQO75417 2590 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 TRAV34A0A0B4J273 112 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 OR5H15A6NDH6 313 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 IQCF5A8MTL0 148 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 ZNF724A8MTY0 619 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 RRP8O43159 456 aaKnown RBP3.49□□□□□ -1.85
PRPF39-209ENST00000556353 B4GAT1O43505 415 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 TBL1XO60907 577 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 CIB2O75838 187 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 MFN2O95140 757 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 DIRAS3O95661 229 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 PTBP3O95758 552 aaKnown RBP3.49□□□□□ -1.85
PRPF39-209ENST00000556353 CSTAP01040 98 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 CTSLP07711 333 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 ANKRD34CP0C6C1 535 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 GIMD1P0DJR0 217 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 NCF1P14598 390 aaPredicted RBP3.49□□□□□ -1.85
PRPF39-209ENST00000556353 PTAFRP25105 342 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 FASP25445 335 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 PTPN4P29074 926 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 SERPINB6P35237 376 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 PSMD8P48556 350 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 CDH6P55285 790 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 GPX6P59796 221 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 GAMTQ14353 236 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 ABRAXAS2Q15018 415 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 KLHL38Q2WGJ6 581 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 HFEQ30201 348 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 HNRNPA1L2Q32P51 320 aaKnown RBP3.49□□□□□ -1.85
PRPF39-209ENST00000556353 MS4A13Q5J8X5 152 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 IL23RQ5VWK5 629 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 CGB2Q6NT52 195 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 TTC23LQ6PF05 361 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 AFTPHQ6ULP2 937 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 MSANTD1Q6ZTZ1 278 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 C3orf62Q6ZUJ4 267 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 UTS2BQ765I0 119 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 SIX6OS1Q8N1H7 587 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 ZNF525Q8N782 197 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 CCNYL1Q8N7R7 359 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 SAMD12Q8N8I0 201 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 EIF1ADQ8N9N8 165 aaKnown RBP3.49□□□□□ -1.85
PRPF39-209ENST00000556353 MINDY2Q8NBR6 621 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 ICA1LQ8NDH6 482 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 OR10Z1Q8NGY1 313 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 RAB3IL1Q8TBN0 382 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 SAP25Q8TEE9 199 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 SETD7Q8WTS6 366 aaKnown RBP3.49□□□□□ -1.85
PRPF39-209ENST00000556353 UBLCP1Q8WVY7 318 aaPredicted RBP3.49□□□□□ -1.85
PRPF39-209ENST00000556353 TNFRSF14Q92956 283 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 ESAMQ96AP7 390 aa3.49□□□□□ -1.85
PRPF39-209ENST00000556353 ISG20Q96AZ6 181 aaKnown RBP3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms