RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 OR2T7P0C7T2 308 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 LINC00271P0C7V0 271 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 ATF1P18846 271 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 MTNR1BP49286 362 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 CD163Q86VB7 1156 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 DUSP18Q8NEJ0 188 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 OR2T27Q8NH04 317 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 SP7Q8TDD2 431 aaPredicted RBP13.58□□□□□ -0.24
CUX1-215ENST00000556210 INTS14Q96SY0 518 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 DDOQ99489 341 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 RNF32Q9H0A6 362 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 PRDM9Q9NQV7 894 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 MMP17Q9ULZ9 603 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 SLC22A13Q9Y226 551 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 A0A0B4J293 547 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 CREBL2O60519 120 aaPredicted RBP13.57□□□□□ -0.24
CUX1-215ENST00000556210 RP2O75695 350 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 F10P00742 488 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 PRKACAP17612 351 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 PGCP20142 388 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 HSD11B1P28845 292 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 TAGLNQ01995 201 aaKnown RBP13.57□□□□□ -0.24
CUX1-215ENST00000556210 POU3F1Q03052 451 aaPredicted RBP13.57□□□□□ -0.24
CUX1-215ENST00000556210 ARFRP1Q13795 201 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 EIF2B1Q14232 305 aaKnown RBP13.57□□□□□ -0.24
CUX1-215ENST00000556210 SGCAQ16586 387 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 WBP2NLQ6ICG8 309 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 OR52I2Q8NH67 350 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 C8orf44Q96CB5 159 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 MOGAT1Q96PD6 335 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 ZNF304Q9HCX3 659 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 MRPS17Q9Y2R5 130 aaKnown RBP13.57□□□□□ -0.24
CUX1-215ENST00000556210 NOP16Q9Y3C1 178 aaKnown RBP13.57□□□□□ -0.24
CUX1-215ENST00000556210 SPTY2D1-AS1A0A0U1RR47 76 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 TRABD2BA6NFA1 517 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 DUX1O43812 170 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 SRPX2O60687 465 aaPredicted RBP13.57□□□□□ -0.24
CUX1-215ENST00000556210 THY1P04216 161 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 DCNP07585 359 aaKnown RBP13.57□□□□□ -0.24
CUX1-215ENST00000556210 FGF9P31371 208 aaPredicted RBP13.57□□□□□ -0.24
CUX1-215ENST00000556210 OPCMLQ14982 345 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 ZPLD1Q8TCW7 415 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 PELI1Q96FA3 418 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 GSX2Q9BZM3 304 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 CGGBP1Q9UFW8 167 aaPredicted RBP13.57□□□□□ -0.24
CUX1-215ENST00000556210 TBX19O60806 448 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 ICOSLGO75144 302 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 H2BFMP0C1H6 154 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 BEX5Q5H9J7 111 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 TSSK4Q6SA08 328 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 TMEM91Q6ZNR0 172 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 ZNF595Q8IYB9 648 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 OR56B4Q8NH76 319 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 ADAMTS14Q8WXS8 1223 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 SLC6A7Q99884 636 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 MENTQ9BUN1 341 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 PPA2Q9H2U2 334 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 ANKRD19PQ9H560 264 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 ZNF281Q9Y2X9 895 aa13.57□□□□□ -0.24
CUX1-215ENST00000556210 TLE3Q04726 772 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 TCTE1Q5JU00 501 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 CD276Q5ZPR3 534 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 MAMDC2Q7Z304 686 aaPredicted RBP13.56□□□□□ -0.24
CUX1-215ENST00000556210 OR6N1Q8NGY5 312 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 KTI12Q96EK9 354 aaPredicted RBP13.56□□□□□ -0.24
CUX1-215ENST00000556210 TCTN2Q96GX1 697 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 SPACA5Q96QH8 159 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 ERVMER34-1Q9H9K5 563 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 C5orf51A6NDU8 294 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 TNFRSF10CO14798 259 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 CD14P08571 375 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 C19orf57Q0VDD7 668 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 EIF2B5Q13144 721 aaKnown RBP13.56□□□□□ -0.24
CUX1-215ENST00000556210 SERTAD2Q14140 314 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 FZD2Q14332 565 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 OR4K17Q8NGC6 315 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 RBPMSQ93062 196 aaKnown RBP13.56□□□□□ -0.24
CUX1-215ENST00000556210 GIMAP5Q96F15 307 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 C10orf90Q96M02 699 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 WDR77Q9BQA1 342 aaPredicted RBP13.56□□□□□ -0.24
CUX1-215ENST00000556210 PPP1R3EQ9H7J1 279 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 WDR76Q9H967 626 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 ATP6V1G2-DDX39BF2Z307 99 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 ZNF749O43361 778 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 ANXA7P20073 488 aaKnown RBP13.56□□□□□ -0.24
CUX1-215ENST00000556210 EEF1A1P68104 462 aaKnown RBP13.56□□□□□ -0.24
CUX1-215ENST00000556210 TNK1Q13470 666 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 TRAM1Q15629 374 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 IQCF2Q8IXL9 164 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 POGLUT1Q8NBL1 392 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 OR2AJ1Q8NGZ0 328 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 BRIX1Q8TDN6 353 aaKnown RBP13.56□□□□□ -0.24
CUX1-215ENST00000556210 KLHL15Q96M94 604 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 STACQ99469 402 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 FBRSQ9HAH7 460 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 IFT46Q9NQC8 304 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 FNDC1Q4ZHG4 1894 aaPredicted RBP13.56□□□□□ -0.24
CUX1-215ENST00000556210 DSPPQ9NZW4 1301 aa13.56□□□□□ -0.24
CUX1-215ENST00000556210 HCKP08631 526 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms