RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 FBXL3Q9UKT7 428 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 ITPR2Q14571 2701 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 A0A087WUU8 490 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 J3KTA2 159 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 hCG_2039718K7EN88 272 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 HS3ST1O14792 307 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 GYG2O15488 501 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 MGRN1O60291 552 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 SERPINI2O75830 405 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 ATP5HO75947 161 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 UBOX5O94941 541 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 IGHMP01871 453 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 T-ENOLP0DO92 83 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 HLA-DOBP13765 273 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 VLDLRP98155 873 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 SPIBQ01892 262 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 BSPH1Q075Z2 132 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 ACKR1Q16570 336 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 CEACAM16Q2WEN9 425 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 ALG10Q5BKT4 473 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 C9orf135Q5VTT2 229 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 RINLQ6ZS11 566 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 TMPRSS11FQ6ZWK6 438 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 ZNF627Q7L945 461 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 PIWIL3Q7Z3Z3 882 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 DPPA2Q7Z7J5 298 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 OAFQ86UD1 273 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 LINC00471Q8N535 108 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 LRRC17Q8N6Y2 441 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 NOXO1Q8NFA2 376 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 SLC7A13Q8TCU3 470 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 FBXW5Q969U6 566 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 DENND2DQ9H6A0 471 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 SMURF2Q9HAU4 748 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 FAIMQ9NVQ4 179 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 TAS2R1Q9NYW7 299 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 RHCGQ9UBD6 479 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 V9GYQ6 96 aa12.61□□□□□ -0.39
CCDC88C-207ENST00000554051 APCP25054 2843 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 A6NIZ1 184 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 M0R3G1 203 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 PIP5K1CO60331 668 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 KRT36O76013 467 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 GADD45GO95257 159 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 ATE1O95260 518 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 AQP2P41181 271 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 CLRN1P58418 232 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 RAP1BP61224 184 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 RAP1AP62834 184 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 TRAP1Q12931 704 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 CAMK2DQ13557 499 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 FAM98BQ52LJ0 330 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 ALKBH2Q6NS38 261 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 NHLRC1Q6VVB1 395 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 ZDHHC21Q8IVQ6 265 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 FAM86B1Q8N7N1 296 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 ZNF611Q8N823 705 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 TMEM54Q969K7 222 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 HS3ST6Q96QI5 342 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 CCL19Q99731 98 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 KCNS3Q9BQ31 491 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 TXNIPQ9H3M7 391 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 UBTD1Q9HAC8 227 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 GLTPQ9NZD2 209 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 TMCC3Q9ULS5 477 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 AURKCQ9UQB9 309 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 POFUT2Q9Y2G5 429 aa12.6□□□□□ -0.39
CCDC88C-207ENST00000554051 CELSR2Q9HCU4 2923 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 PDE5AO76074 875 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 FARS2O95363 451 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 PGA4P0DJD7 388 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 PGA3P0DJD8 388 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 CDH2P19022 906 aaPredicted RBP12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 ATP6V1B2P21281 511 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 CD40P25942 277 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 ARR3P36575 388 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 MAGEA2P43356 314 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 ZNF84P51523 738 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 ARF1P84077 181 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 CHRNB3Q05901 458 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 ZNF672Q499Z4 452 aaPredicted RBP12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 CARD17Q5XLA6 110 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 PODNL1Q6PEZ8 512 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 CYP2R1Q6VVX0 501 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 TSEN54Q7Z6J9 526 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 WDR31Q8NA23 367 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 OR4K5Q8NGD3 323 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 ASB10Q8WXI3 467 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 BCL2L2Q92843 193 aaPredicted RBP12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 CCDC124Q96CT7 223 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 SEPHS2Q99611 448 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 FOXB1Q99853 325 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 THTPAQ9BU02 230 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 ALG12Q9BV10 488 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 EMC6Q9BV81 110 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 KATNB1Q9BVA0 655 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 CXorf56Q9H5V9 222 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 CCM2LQ9NUG4 571 aaPredicted RBP12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 NPAP1Q9NZP6 1156 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 PLEKHA6Q9Y2H5 1048 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms