RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 RAE1P78406 368 aaKnown RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 KLF9Q13886 244 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 MICBQ29980 383 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 LINC00303Q3SY05 128 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 FAM69AQ5T7M9 428 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 VASNQ6EMK4 673 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 OR5M10Q6IEU7 315 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 SFXN4Q6P4A7 337 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 HIST3H2AQ7L7L0 130 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 MEIOBQ8N635 442 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 BPIFCQ8NFQ6 507 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 KAT2AQ92830 837 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 HIST1H2ACQ93077 130 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 ELP4Q96EB1 424 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 NARS2Q96I59 477 aaKnown RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 FUZQ9BT04 418 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 NDC1Q9BTX1 674 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 SLC25A32Q9H2D1 315 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 CA10Q9NS85 328 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 CUTCQ9NTM9 273 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 TAS2R3Q9NYW6 316 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 FARSAQ9Y285 508 aaKnown RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 DTX4Q9Y2E6 619 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 ZNF462Q96JM2 2506 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 CNTRLQ7Z7A1 2325 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 COL6A6A6NMZ7 2263 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 SCN2AQ99250 2005 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 COL12A1Q99715 3063 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 GNG14A0A1W2PPG7 69 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 OR2M5A3KFT3 312 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 FITM1A5D6W6 292 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 C21orf140B9A014 251 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 DISC1C4P0D8 188 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 DVL2O14641 736 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 EIF1BO60739 113 aaKnown RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 KLF7O75840 302 aaPredicted RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 AQP8O94778 261 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 ATG12O94817 140 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 TBX6O95947 436 aaPredicted RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 SERPINA3P01011 423 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 KLK1P06870 262 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 ARAFP10398 606 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 BCL6P41182 706 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 EIF1P41567 113 aaKnown RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 SMIM11AP58511 58 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 EFNB1P98172 346 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 ZNF155Q12901 538 aaPredicted RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 IL10RAQ13651 578 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 SERTAD2Q14140 314 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 LY6DQ14210 128 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 NDUFA9Q16795 377 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 PRTGQ2VWP7 1150 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 ZNF791Q3KP31 576 aaPredicted RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 NKAIN1Q4KMZ8 207 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 KHDRBS2Q5VWX1 349 aaKnown RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 ZNF660Q6AZW8 331 aaPredicted RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 SFRP4Q6FHJ7 346 aaPredicted RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 ACSM5Q6NUN0 579 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 TMEM88Q6PEY1 159 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 C5orf46Q6UWT4 87 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 COMMD6Q7Z4G1 85 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 VN1R4Q7Z5H5 301 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 ARHGEF39Q8N4T4 335 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 TBC1D19Q8N5T2 526 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 ZSCAN1Q8NBB4 408 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 OR11G2Q8NGC1 345 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 OR52N1Q8NH53 320 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 GOT1L1Q8NHS2 421 aaPredicted RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 GNPDA2Q8TDQ7 276 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 SPRYD4Q8WW59 207 aaPredicted RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 TSNAXQ99598 290 aaKnown RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 BHLHE41Q9C0J9 482 aaPredicted RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 OR10A4Q9H209 315 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 DDX31Q9H8H2 851 aaKnown RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 EXOSC3Q9NQT5 275 aaKnown RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 NTMQ9P121 344 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 MYEF2Q9P2K5 600 aaKnown RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 ZNF69Q9UC07 566 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 FBXW2Q9UKT8 454 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 FLVCR2Q9UPI3 526 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 MRPS2Q9Y399 296 aaKnown RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 PCSK5Q92824 1860 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 ZNF891A8MT65 544 aaPredicted RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 RTCAO00442 366 aaKnown RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 RNF13O43567 381 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 CREBL2O60519 120 aaPredicted RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 NDUFS6O75380 124 aaKnown RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 OR2A4O95047 310 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 SPDEFO95238 335 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 C6orf47O95873 294 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 PRB1P04280 392 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 S100A8P05109 93 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 IFNGR1P15260 489 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 PSMB1P20618 241 aaKnown RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 RPS15P62841 145 aaKnown RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 DCDP81605 110 aaKnown RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 CDK5Q00535 292 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 TBR1Q16650 682 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 DEFB109BQ30KR1 87 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 PAN3Q58A45 887 aaKnown RBP6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms