RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 WDR45BQ5MNZ6 344 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 LYSMD4Q5XG99 296 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 MZT2BQ6NZ67 158 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 ZCCHC12Q6PEW1 402 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 PLXDC2Q6UX71 529 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 SIAH3Q8IW03 269 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 ARIH2OSQ8N7S6 290 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 OR51D1Q8NGF3 324 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 GRPEL2Q8TAA5 225 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF486Q96H40 463 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-215ENST00000552823 TSPAN32Q96QS1 320 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 SPOCK3Q9BQ16 436 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 LMF2Q9BU23 707 aaKnown RBP5.07□□□□□ -1.6
LIMA1-215ENST00000552823 CCDC32Q9BV29 185 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 MFRPQ9BY79 579 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 MMP25Q9NPA2 562 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 SLC22A11Q9NSA0 550 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 NTMQ9P121 344 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 KLHL13Q9P2N7 655 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 FBXL3Q9UKT7 428 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 HSPB11Q9Y547 144 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 HRH3Q9Y5N1 445 aa5.07□□□□□ -1.6
LIMA1-215ENST00000552823 A0A0B4J293 547 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 A0A1W2PPL8 197 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 A0A1W2PQM1 296 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 TEX46H3BTG2 121 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 PIN1P1O15428 100 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 UCHL1P09936 223 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 IFNGR1P15260 489 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 SSTR2P30874 369 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 CDAP32320 146 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 AGFG1P52594 562 aaKnown RBP5.06□□□□□ -1.6
LIMA1-215ENST00000552823 PSMD4P55036 377 aaKnown RBP5.06□□□□□ -1.6
LIMA1-215ENST00000552823 GPR85P60893 370 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 RPS15P62841 145 aaKnown RBP5.06□□□□□ -1.6
LIMA1-215ENST00000552823 CDK5R1Q15078 307 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 FCN2Q15485 313 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 KLHL26Q53HC5 615 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 MESTQ5EB52 335 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 MANEAQ5SRI9 462 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 TMEM53Q6P2H8 277 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF627Q7L945 461 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 CMTM4Q8IZR5 234 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 JAGN1Q8N5M9 183 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 POMGNT2Q8NAT1 580 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF485Q8NCK3 441 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF248Q8NDW4 579 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF721Q8TF20 911 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 NR4A3Q92570 626 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 TMEM106AQ96A25 262 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 UPRTQ96BW1 309 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 SLC46A1Q96NT5 459 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 CACNG6Q9BXT2 260 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 DEFB126Q9BYW3 111 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 B3GNT4Q9C0J1 378 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 WWTR1Q9GZV5 400 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 MED17Q9NVC6 651 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 ADAM30Q9UKF2 790 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 RARRES3Q9UL19 164 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 RCE1Q9Y256 329 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 NPFFR2Q9Y5X5 522 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 MUC22E2RYF6 1773 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-215ENST00000552823 TECTAO75443 2155 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 MED13Q9UHV7 2174 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 ASPMQ8IZT6 3477 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 TNRC18O15417 2968 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-215ENST00000552823 A0A1B0GX78 115 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 EFCAB7A8K855 629 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 SEC14L5O43304 696 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 LMX1BO60663 402 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 TRIM3O75382 744 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-215ENST00000552823 PPM1BO75688 479 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 GLB1P16278 677 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 CTLA4P16410 223 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF28P17035 718 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 SRMP19623 302 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 EVI2BP34910 448 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 ETV6P41212 452 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 MAP3K8P41279 467 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 GABRA4P48169 554 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 RNF4P78317 190 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 GUCA2AQ02747 115 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 SKP2Q13309 424 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 FHL1Q13642 323 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 ANGPT1Q15389 498 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 ELAVL1Q15717 326 aaKnown RBP5.06□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF141Q15928 474 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 DPY19L2P2Q6ZN68 376 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 ATG4DQ86TL0 474 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-215ENST00000552823 BATF2Q8N1L9 274 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 DEFB123Q8N688 67 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-215ENST00000552823 OR10G3Q8NGC4 313 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 OR5AK2Q8NH90 309 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 OR5B2Q96R09 309 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 EMC7Q9NPA0 242 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 TMA7Q9Y2S6 64 aaKnown RBP5.06□□□□□ -1.6
LIMA1-215ENST00000552823 PTRH2Q9Y3E5 179 aaKnown RBP5.06□□□□□ -1.6
LIMA1-215ENST00000552823 CADP27708 2225 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 FREM1Q5H8C1 2179 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms