RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 EXOC3L2Q2M3D2 409 aa3.52□□□□□ -1.85
LIMA1-205ENST00000550592 BEND3Q5T5X7 828 aa3.52□□□□□ -1.85
LIMA1-205ENST00000550592 RSBN1Q5VWQ0 802 aaPredicted RBP3.52□□□□□ -1.85
LIMA1-205ENST00000550592 ATL3Q6DD88 541 aa3.52□□□□□ -1.85
LIMA1-205ENST00000550592 CENPPQ6IPU0 288 aa3.52□□□□□ -1.85
LIMA1-205ENST00000550592 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.52□□□□□ -1.85
LIMA1-205ENST00000550592 CCDC137Q6PK04 289 aaKnown RBP3.52□□□□□ -1.85
LIMA1-205ENST00000550592 CATSPER1Q8NEC5 780 aa3.52□□□□□ -1.85
LIMA1-205ENST00000550592 OR4D9Q8NGE8 314 aa3.52□□□□□ -1.85
LIMA1-205ENST00000550592 ZNF606Q8WXB4 792 aa3.52□□□□□ -1.85
LIMA1-205ENST00000550592 SLC41A3Q96GZ6 507 aa3.52□□□□□ -1.85
LIMA1-205ENST00000550592 PSKH2Q96QS6 385 aa3.52□□□□□ -1.85
LIMA1-205ENST00000550592 IL4I1Q96RQ9 567 aa3.52□□□□□ -1.85
LIMA1-205ENST00000550592 VCX2Q9H322 139 aa3.52□□□□□ -1.85
LIMA1-205ENST00000550592 LRRN3Q9H3W5 708 aa3.52□□□□□ -1.85
LIMA1-205ENST00000550592 DCDC2Q9UHG0 476 aa3.52□□□□□ -1.85
LIMA1-205ENST00000550592 PTBP2Q9UKA9 531 aaKnown RBP3.52□□□□□ -1.85
LIMA1-205ENST00000550592 POLDIP2Q9Y2S7 368 aa3.52□□□□□ -1.85
LIMA1-205ENST00000550592 LAMA5O15230 3695 aa3.52□□□□□ -1.85
LIMA1-205ENST00000550592 ABCA2Q9BZC7 2435 aa3.52□□□□□ -1.85
LIMA1-205ENST00000550592 SPTBN1Q01082 2364 aaKnown RBP3.52□□□□□ -1.85
LIMA1-205ENST00000550592 PLXNA4Q9HCM2 1894 aa3.52□□□□□ -1.85
LIMA1-205ENST00000550592 SVILO95425 2214 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 RRP8O43159 456 aaKnown RBP3.51□□□□□ -1.85
LIMA1-205ENST00000550592 CXCL13O43927 109 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 SCGNO76038 276 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 OR8U8P0C7N1 319 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 KLK2P20151 261 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 PSMB1P20618 241 aaKnown RBP3.51□□□□□ -1.85
LIMA1-205ENST00000550592 FGF9P31371 208 aaPredicted RBP3.51□□□□□ -1.85
LIMA1-205ENST00000550592 YWHABP31946 246 aaKnown RBP3.51□□□□□ -1.85
LIMA1-205ENST00000550592 DEKP35659 375 aaKnown RBP3.51□□□□□ -1.85
LIMA1-205ENST00000550592 CASP4P49662 377 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 SLC26A2P50443 739 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 DAP3P51398 398 aaKnown RBP3.51□□□□□ -1.85
LIMA1-205ENST00000550592 DIO3P55073 304 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 EGFEM1PQ0D2K5 195 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 HTR4Q13639 388 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 ELAVL3Q14576 367 aaKnown RBP3.51□□□□□ -1.85
LIMA1-205ENST00000550592 WDR74Q6RFH5 385 aaPredicted RBP3.51□□□□□ -1.85
LIMA1-205ENST00000550592 KDELC1Q6UW63 502 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 CCDC80Q76M96 950 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 LCA5Q86VQ0 697 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 ZNF679Q8IYX0 411 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 SPAG16Q8N0X2 631 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 CEND1Q8N111 149 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 C11orf42Q8N5U0 333 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 TCEAL3Q969E4 200 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 EFHD2Q96C19 240 aaPredicted RBP3.51□□□□□ -1.85
LIMA1-205ENST00000550592 CCNL2Q96S94 520 aaPredicted RBP3.51□□□□□ -1.85
LIMA1-205ENST00000550592 CCT7Q99832 543 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 SLC38A10Q9HBR0 1119 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 PHF11Q9UIL8 331 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 TP53TG3Q9ULZ0 132 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 MEMO1Q9Y316 297 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 KIF25-AS1Q9Y6Z4 181 aa3.51□□□□□ -1.85
LIMA1-205ENST00000550592 PLXNB3Q9ULL4 1909 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 ICE1Q9Y2F5 2266 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 F8P00451 2351 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 PARP14Q460N5 1801 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 TUBAL3A6NHL2 446 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 ZFP92A6NM28 416 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 KIF2AO00139 706 aaPredicted RBP3.5□□□□□ -1.85
LIMA1-205ENST00000550592 HAS3O00219 553 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 RIPK2O43353 540 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 SLITRK3O94933 977 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 LYPD3O95274 346 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 IGHDP01880 384 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 NTSP30990 170 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 HOXA6P31267 233 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 OR3A4PP47883 348 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 PLK1P53350 603 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 KRTAP10-7P60409 375 aaPredicted RBP3.5□□□□□ -1.85
LIMA1-205ENST00000550592 RPS14P62263 151 aaKnown RBP3.5□□□□□ -1.85
LIMA1-205ENST00000550592 DPYSL2Q16555 572 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 TRIM16LQ309B1 348 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 SFT2D3Q587I9 215 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 TPGS2Q68CL5 300 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 Q6ZPB1 254 aaPredicted RBP3.5□□□□□ -1.85
LIMA1-205ENST00000550592 CCDC50Q8IVM0 306 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 ATP6V0D2Q8N8Y2 350 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 NEIL2Q969S2 332 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 TMEM43Q9BTV4 400 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 LRRC40Q9H9A6 602 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 UBQLN1Q9UMX0 589 aaKnown RBP3.5□□□□□ -1.85
LIMA1-205ENST00000550592 TIMM10BQ9Y5J6 103 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 SPG11Q96JI7 2443 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 AGRNO00468 2067 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 DENND4AQ7Z401 1863 aa3.5□□□□□ -1.85
LIMA1-205ENST00000550592 KIAA1671Q9BY89 1806 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 CLUHO75153 1309 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 NRCAMQ92823 1304 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 MYH1P12882 1939 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 A0A1B0GVY2 172 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 K7N7A8 449 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 OR10H3O60404 316 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 SURF6O75683 361 aaKnown RBP3.49□□□□□ -1.85
LIMA1-205ENST00000550592 LY6G6DO95868 133 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 IGHV3-48P01763 117 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 ZNF853P0CG23 659 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms