RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 HPF1Q9NWY4 346 aa14.35□□□□□ -0.11
CUX1-211ENST00000546411 SUSD2Q9UGT4 822 aa14.35□□□□□ -0.11
CUX1-211ENST00000546411 SRPK3Q9UPE1 567 aa14.35□□□□□ -0.11
CUX1-211ENST00000546411 NYNRINQ9P2P1 1898 aaKnown RBP14.34□□□□□ -0.11
CUX1-211ENST00000546411 GIMAP1-GIMAP5A0A087WTJ2 511 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 HRKO00198 91 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 KNG1P01042 644 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 ASAH1Q13510 395 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 C14orf28Q4W4Y0 310 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 PPP1R3BQ86XI6 285 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 OR14L1PQ8NHC6 308 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 GIMAP5Q96F15 307 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 LRRC61Q9BV99 259 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 WDR76Q9H967 626 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 C12orf4Q9NQ89 552 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 PLEK2Q9NYT0 353 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 NUPL2O15504 423 aaKnown RBP14.34□□□□□ -0.11
CUX1-211ENST00000546411 NSA2O95478 260 aaKnown RBP14.34□□□□□ -0.11
CUX1-211ENST00000546411 LYSMD4Q5XG99 296 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 OR52I2Q8NH67 350 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 OR56B4Q8NH76 319 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 ST6GALNAC5Q9BVH7 336 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 SLA2Q9H6Q3 261 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 TREM1Q9NP99 234 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 ZNF346Q9UL40 294 aaKnown RBP14.34□□□□□ -0.11
CUX1-211ENST00000546411 COA3Q9Y2R0 106 aaPredicted RBP14.34□□□□□ -0.11
CUX1-211ENST00000546411 A0A087WV62 115 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 PEX14O75381 377 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 RLN2P04090 185 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 AFF3P51826 1226 aaKnown RBP14.34□□□□□ -0.11
CUX1-211ENST00000546411 COL28A1Q2UY09 1125 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 GLYATL3Q5SZD4 288 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 C17orf47Q8NEP4 570 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 GPR119Q8TDV5 335 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 SNX18Q96RF0 628 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 URM1Q9BTM9 101 aaKnown RBP14.34□□□□□ -0.11
CUX1-211ENST00000546411 TMEM43Q9BTV4 400 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 PARPBPQ9NWS1 579 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 TAS2R3Q9NYW6 316 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 KCND3Q9UK17 655 aa14.34□□□□□ -0.11
CUX1-211ENST00000546411 MED12Q93074 2177 aa14.33□□□□□ -0.11
CUX1-211ENST00000546411 TBX19O60806 448 aa14.33□□□□□ -0.11
CUX1-211ENST00000546411 NR2C1P13056 603 aa14.33□□□□□ -0.11
CUX1-211ENST00000546411 CAPZBP47756 277 aa14.33□□□□□ -0.11
CUX1-211ENST00000546411 BIDP55957 195 aa14.33□□□□□ -0.11
CUX1-211ENST00000546411 MFSD13AQ14CX5 517 aa14.33□□□□□ -0.11
CUX1-211ENST00000546411 C16orf47Q6ZP98 133 aaPredicted RBP14.33□□□□□ -0.11
CUX1-211ENST00000546411 ELP5Q8TE02 316 aa14.33□□□□□ -0.11
CUX1-211ENST00000546411 FLVCR2Q9UPI3 526 aa14.33□□□□□ -0.11
CUX1-211ENST00000546411 ABCA7Q8IZY2 2146 aa14.33□□□□□ -0.11
CUX1-211ENST00000546411 FITM1A5D6W6 292 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 MEGF11A6BM72 1044 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 P2RY10O00398 339 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 HTR3BO95264 441 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 HRGP04196 525 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 ATP1B1P05026 303 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 FOSL2P15408 326 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 DIO1P49895 249 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 CHRFAM7AQ494W8 412 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 GARNL3Q5VVW2 1013 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 FCRL6Q6DN72 434 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 MORN4Q8NDC4 146 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 OR5H6Q8NGV6 325 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 SEC22AQ96IW7 307 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 RNF170Q96K19 258 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 SEMA4CQ9C0C4 833 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 AUNIPQ9H7T9 357 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 POMT2Q9UKY4 750 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 NPFFR2Q9Y5X5 522 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 AKR7A2O43488 359 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 AKR7A3O95154 331 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 WDPCPO95876 746 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 KIR2DL1P43626 348 aaPredicted RBP14.33□□□□□ -0.12
CUX1-211ENST00000546411 DAP3P51398 398 aaKnown RBP14.33□□□□□ -0.12
CUX1-211ENST00000546411 ZIC1Q15915 447 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 ACKR1Q16570 336 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 PTCRAQ6ISU1 281 aaPredicted RBP14.33□□□□□ -0.12
CUX1-211ENST00000546411 ZNF704Q6ZNC4 412 aaPredicted RBP14.33□□□□□ -0.12
CUX1-211ENST00000546411 ZNF767PQ75MW2 155 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 KANSL1Q7Z3B3 1105 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 KCTD20Q7Z5Y7 419 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 LRRC18Q8N456 261 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 TRMT61AQ96FX7 289 aaKnown RBP14.33□□□□□ -0.12
CUX1-211ENST00000546411 SLC41A2Q96JW4 573 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 QPCTLQ9NXS2 382 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 SLC22A13Q9Y226 551 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 TRAV36DV7A0A075B6V5 113 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 CENPBD1B2RD01 187 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 SLC43A1O75387 559 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 GPANK1O95872 356 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 LALBAP00709 142 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 CD34P28906 385 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 EVI2BP34910 448 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 ZNF84P51523 738 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 UBE2NLQ5JXB2 153 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 CBLN3Q6UW01 205 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 OR14A16Q8NHC5 309 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 BARHL1Q9BZE3 327 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 CDCP1Q9H5V8 836 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 LHX9Q9NQ69 397 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms