RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 P2RX1P51575 399 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 DHCR24Q15392 516 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 OR2T27Q8NH04 317 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 STK35Q8TDR2 534 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 SFT2D1Q8WV19 159 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 FBXO17Q96EF6 278 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 WDR92Q96MX6 357 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 NPIPA1Q9UND3 350 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 FAM96BQ9Y3D0 163 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 SPTA1P02549 2419 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 BORCS7-ASMTA0A0B4J1R7 106 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 IGLON5A6NGN9 336 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 LY86O95711 162 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 HCKP08631 526 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 RAB5CP51148 216 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 CYCSP99999 105 aaKnown RBP13.11□□□□□ -0.31
LIMS1-215ENST00000544547 TMEM91Q6ZNR0 172 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 OR2W3Q7Z3T1 314 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 MUC20Q8N307 709 aaPredicted RBP13.11□□□□□ -0.31
LIMS1-215ENST00000544547 KCNRGQ8N5I3 272 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 PLPP7Q8NBV4 271 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 PPP1R1CQ8WVI7 109 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 SHDQ96IW2 340 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 METTL7AQ9H8H3 244 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 GPATCH2Q9NW75 528 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 KLF15Q9UIH9 416 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 OR52A4PA6NMU1 304 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 GCM2O75603 506 aaPredicted RBP13.11□□□□□ -0.31
LIMS1-215ENST00000544547 ERCC1P07992 297 aaPredicted RBP13.11□□□□□ -0.31
LIMS1-215ENST00000544547 ANKRD34CP0C6C1 535 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 SPP1P10451 314 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 BDKRB2P30411 391 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 FABP9Q0Z7S8 132 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 KIAA0141Q14154 515 aaPredicted RBP13.11□□□□□ -0.31
LIMS1-215ENST00000544547 OTPQ5XKR4 325 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 ZNF761Q86XN6 746 aaPredicted RBP13.11□□□□□ -0.31
LIMS1-215ENST00000544547 GKN2Q86XP6 184 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 SLC35F3Q8IY50 421 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 OR13C9Q8NGT0 318 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 MIOXQ9UGB7 285 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 ATG4BQ9Y4P1 393 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 SNRPGP15A8MWD9 76 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 LDB3O75112 727 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 NAGAP17050 411 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 EIF4EBP2Q13542 120 aaPredicted RBP13.11□□□□□ -0.31
LIMS1-215ENST00000544547 IRF4Q15306 451 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 SLC35D2Q76EJ3 337 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 SLAMF9Q96A28 289 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 SCGB3A2Q96PL1 93 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 GPA33Q99795 319 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 MBD1Q9UIS9 605 aaPredicted RBP13.11□□□□□ -0.31
LIMS1-215ENST00000544547 FBXL4Q9UKA2 621 aa13.11□□□□□ -0.31
LIMS1-215ENST00000544547 KIAA0355O15063 1070 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 FZD6O60353 706 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 PMS2P2O95744 297 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 AIFM1O95831 613 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 CSTBP04080 98 aaKnown RBP13.1□□□□□ -0.31
LIMS1-215ENST00000544547 F13BP05160 661 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 ITGA5P08648 1049 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 TIMP2P16035 220 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 HIST1H1TP22492 207 aaPredicted RBP13.1□□□□□ -0.31
LIMS1-215ENST00000544547 GPNMBQ14956 572 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 EXOSC7Q15024 291 aaKnown RBP13.1□□□□□ -0.31
LIMS1-215ENST00000544547 MPEG1Q2M385 716 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 ZNF542PQ5EBM4 170 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 LRRC69Q6ZNQ3 347 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 C12orf40Q86WS4 652 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 OR2A12Q8NGT7 310 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 SLC6A18Q96N87 628 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.1□□□□□ -0.31
LIMS1-215ENST00000544547 VEGFDO43915 354 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 AMY2BP19961 511 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 HOXA1P49639 335 aaPredicted RBP13.1□□□□□ -0.31
LIMS1-215ENST00000544547 PRLHRP49683 370 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 MRPL58Q14197 206 aaKnown RBP13.1□□□□□ -0.31
LIMS1-215ENST00000544547 AGERQ15109 404 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 ATRAIDQ6UW56 229 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 FRMD1Q8N878 549 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 OR13C3Q8NGS6 347 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 MARVELD3Q96A59 401 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 PRTFDC1Q9NRG1 225 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 HCRTR2O43614 444 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 TRAPPC6AO75865 159 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 IFNA4P05014 189 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 SLC2A5P22732 501 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 Q499Y3 187 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 LCTLQ6UWM7 567 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 P4HA3Q7Z4N8 544 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 ASPGQ86U10 573 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 KDM8Q8N371 416 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 RSRP1Q9BUV0 290 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 MRI1Q9BV20 369 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 MS4A8Q9BY19 250 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 NCDNQ9UBB6 729 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 CYP8B1Q9UNU6 501 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 KCNE3Q9Y6H6 103 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 FAM186AA6NE01 2351 aa13.1□□□□□ -0.31
LIMS1-215ENST00000544547 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 KDM4EB2RXH2 506 aaPredicted RBP13.09□□□□□ -0.31
LIMS1-215ENST00000544547 TNFSF12O43508 249 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms