RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	PPIE	Q9UNP9	301 aa	Known RBP	13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	PLCL2	Q9UPR0	1127 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	PIN1P1	O15428	100 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	NUDT14	O95848	222 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	ITPKB	P27987	946 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	NUP62	P37198	522 aa	Predicted RBP	13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	RBM34	P42696	430 aa	Known RBP	13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	FASLG	P48023	281 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	IGLV3-21	P80748	117 aa	Predicted RBP	13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	BDH1	Q02338	343 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	HYAL4	Q2M3T9	481 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	SHE	Q5VZ18	495 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	LRRC69	Q6ZNQ3	347 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	LANCL3	Q6ZV70	420 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	BEST4	Q8NFU0	473 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	ZNF563	Q8TA94	476 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	OR2M2	Q96R28	347 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	NRIP3	Q9NQ35	241 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	CUTC	Q9NTM9	273 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286		A0A1W2PR77	199 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286		M0R233	179 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	GPR171	O14626	319 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	DOK2	O60496	412 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	IGLV3-19	P01714	112 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	FCER2	P06734	321 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	AHCY	P23526	432 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	TACR3	P29371	465 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	CCR6	P51684	374 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	NR0B1	P51843	470 aa	Known RBP	13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	NRG3	P56975	720 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	GRM7	Q14831	915 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	LINC00518	Q8N0U6	118 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	RGP1	Q92546	391 aa	Predicted RBP	13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	GFI1	Q99684	422 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	NUDT9	Q9BW91	350 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	ULBP3	Q9BZM4	244 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	DPAGT1	Q9H3H5	408 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	NANS	Q9NR45	359 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	DLL4	Q9NR61	685 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	SDHAF2	Q9NX18	166 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	ICAM5	Q9UMF0	924 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	SLC6A5	Q9Y345	797 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	RTTN	Q86VV8	2226 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	HCRTR2	O43614	444 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	TCRB	P04435	133 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	FOLR1	P15328	257 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	BCKDHB	P21953	392 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	DIO1	P49895	249 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	GPR143	P51810	404 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	SKP2	Q13309	424 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	OR10AC1	Q8NH08	325 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	OR1L3	Q8NH93	324 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	LGALS14	Q8TCE9	139 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	SLC25A36	Q96CQ1	311 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	SMIM19	Q96E16	107 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	DDO	Q99489	341 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	LPAR4	Q99677	370 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	NPAS1	Q99742	590 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	ALG12	Q9BV10	488 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	WDR76	Q9H967	626 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	IFT46	Q9NQC8	304 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	FBXL21	Q9UKT6	434 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	MEIKIN	A0A087WXM9	373 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	RHPN2P1	A8MT19	583 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	ZFPL1	O95159	310 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	PITPNB	P48739	271 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	B2M	P61769	119 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	LINC01590	Q5TEZ4	76 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	LRRC28	Q86X40	367 aa	Predicted RBP	13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	KDM8	Q8N371	416 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	LILRB1	Q8NHL6	650 aa	Predicted RBP	13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	SLC2A12	Q8TD20	617 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	ATOH1	Q92858	354 aa	Predicted RBP	13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	TAAR8	Q969N4	342 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	REG4	Q9BYZ8	158 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	ANKRD10	Q9NXR5	420 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	ZNF337	Q9Y3M9	751 aa		13.42	□□□□□ -0.26
DDX55-209	ENST00000542286	FREM3	P0C091	2139 aa		13.41	□□□□□ -0.26
DDX55-209	ENST00000542286		A0A1B0GVI7	797 aa		13.41	□□□□□ -0.26
DDX55-209	ENST00000542286	SCD	O00767	359 aa		13.41	□□□□□ -0.26
DDX55-209	ENST00000542286	ZNF749	O43361	778 aa		13.41	□□□□□ -0.26
DDX55-209	ENST00000542286	ANKRD34C	P0C6C1	535 aa		13.41	□□□□□ -0.26
DDX55-209	ENST00000542286	EPX	P11678	715 aa		13.41	□□□□□ -0.26
DDX55-209	ENST00000542286	HSD17B7	P56937	341 aa		13.41	□□□□□ -0.26
DDX55-209	ENST00000542286	RPS15	P62841	145 aa	Known RBP	13.41	□□□□□ -0.26
DDX55-209	ENST00000542286	ZNF117	Q03924	483 aa		13.41	□□□□□ -0.26
DDX55-209	ENST00000542286	ZNF74	Q16587	644 aa		13.41	□□□□□ -0.26
DDX55-209	ENST00000542286	ALG10	Q5BKT4	473 aa		13.41	□□□□□ -0.26
DDX55-209	ENST00000542286	CHRDL2	Q6WN34	429 aa		13.41	□□□□□ -0.26
DDX55-209	ENST00000542286	ATG4D	Q86TL0	474 aa	Predicted RBP	13.41	□□□□□ -0.26
DDX55-209	ENST00000542286	FTMT	Q8N4E7	242 aa		13.41	□□□□□ -0.26
DDX55-209	ENST00000542286	OR2T35	Q8NGX2	323 aa		13.41	□□□□□ -0.26
DDX55-209	ENST00000542286	OR2T4	Q8NH00	348 aa		13.41	□□□□□ -0.26
DDX55-209	ENST00000542286	RNF166	Q96A37	237 aa	Predicted RBP	13.41	□□□□□ -0.26
DDX55-209	ENST00000542286	RADIL	Q96JH8	1075 aa		13.41	□□□□□ -0.26
DDX55-209	ENST00000542286	AMELY	Q99218	206 aa		13.41	□□□□□ -0.26
DDX55-209	ENST00000542286	ATPIF1	Q9UII2	106 aa		13.41	□□□□□ -0.26
DDX55-209	ENST00000542286	EFCAB7	A8K855	629 aa		13.41	□□□□□ -0.26
DDX55-209	ENST00000542286	MT-ND4	P03905	459 aa		13.41	□□□□□ -0.26
DDX55-209	ENST00000542286	OR2T7	P0C7T2	308 aa		13.41	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms