RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 PRKAR1BP31321 381 aa13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 GLRXP35754 106 aa13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 MAGEB1P43366 347 aa13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 GPR6P46095 362 aaPredicted RBP13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 LMO4P61968 165 aa13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 RAB39AQ14964 217 aa13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 HHATQ5VTY9 493 aa13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 C12orf54Q6X4T0 127 aa13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 WDR88Q6ZMY6 472 aa13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 ZNF627Q7L945 461 aa13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 GLCCI1Q86VQ1 547 aa13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 ADPRHL1Q8NDY3 354 aa13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 SLC35B4Q969S0 331 aa13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 TMEM186Q96B77 213 aa13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 MOV10Q9HCE1 1003 aaKnown RBP13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 THAP1Q9NVV9 213 aa13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 RPS6KB2Q9UBS0 482 aa13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 METRNQ9UJH8 293 aa13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 PRDM4Q9UKN5 801 aa13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 SPEF1Q9Y4P9 236 aa13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 A0A0B4J2E0 115 aa13.24□□□□□ -0.29
CLSTN3-213ENST00000541953 A0A1B0GX12 115 aa13.24□□□□□ -0.29
CLSTN3-213ENST00000541953 TMEM120BA0PK00 339 aa13.24□□□□□ -0.29
CLSTN3-213ENST00000541953 TRPC5OSA6NMA1 111 aa13.24□□□□□ -0.29
CLSTN3-213ENST00000541953 OR2T1O43869 369 aa13.24□□□□□ -0.29
CLSTN3-213ENST00000541953 CLPTM1O96005 669 aa13.24□□□□□ -0.29
CLSTN3-213ENST00000541953 GAAP10253 952 aa13.24□□□□□ -0.29
CLSTN3-213ENST00000541953 CCL2P13500 99 aa13.24□□□□□ -0.29
CLSTN3-213ENST00000541953 NQO1P15559 274 aaKnown RBP13.24□□□□□ -0.29
CLSTN3-213ENST00000541953 ERVS71-1P61550 626 aa13.24□□□□□ -0.29
CLSTN3-213ENST00000541953 MSANTD1Q6ZTZ1 278 aa13.24□□□□□ -0.29
CLSTN3-213ENST00000541953 FUNDC1Q8IVP5 155 aa13.24□□□□□ -0.29
CLSTN3-213ENST00000541953 SKA3Q8IX90 412 aa13.24□□□□□ -0.29
CLSTN3-213ENST00000541953 KIRREL3Q8IZU9 778 aa13.24□□□□□ -0.29
CLSTN3-213ENST00000541953 LRRC37BQ96QE4 947 aa13.24□□□□□ -0.29
CLSTN3-213ENST00000541953 RMND5AQ9H871 391 aa13.24□□□□□ -0.29
CLSTN3-213ENST00000541953 FBXO9Q9UK97 447 aaPredicted RBP13.24□□□□□ -0.29
CLSTN3-213ENST00000541953 LOC105371242A0A075B767 164 aa13.23□□□□□ -0.29
CLSTN3-213ENST00000541953 MSMBP08118 114 aa13.23□□□□□ -0.29
CLSTN3-213ENST00000541953 ETS2P15036 469 aa13.23□□□□□ -0.29
CLSTN3-213ENST00000541953 ACHEP22303 614 aa13.23□□□□□ -0.29
CLSTN3-213ENST00000541953 AQP1P29972 269 aa13.23□□□□□ -0.29
CLSTN3-213ENST00000541953 EVX1P49640 407 aa13.23□□□□□ -0.29
CLSTN3-213ENST00000541953 CDH12P55289 794 aa13.23□□□□□ -0.29
CLSTN3-213ENST00000541953 RAB1AP62820 205 aa13.23□□□□□ -0.29
CLSTN3-213ENST00000541953 FADDQ13158 208 aa13.23□□□□□ -0.29
CLSTN3-213ENST00000541953 PAGE3Q5JUK9 113 aa13.23□□□□□ -0.29
CLSTN3-213ENST00000541953 DHRS4L2Q6PKH6 230 aa13.23□□□□□ -0.29
CLSTN3-213ENST00000541953 TSPYL5Q86VY4 417 aaPredicted RBP13.23□□□□□ -0.29
CLSTN3-213ENST00000541953 IL17RDQ8NFM7 739 aa13.23□□□□□ -0.29
CLSTN3-213ENST00000541953 RNF217Q8TC41 542 aa13.23□□□□□ -0.29
CLSTN3-213ENST00000541953 RDH5Q92781 318 aa13.23□□□□□ -0.29
CLSTN3-213ENST00000541953 FOXB1Q99853 325 aa13.23□□□□□ -0.29
CLSTN3-213ENST00000541953 PARD6BQ9BYG5 372 aa13.23□□□□□ -0.29
CLSTN3-213ENST00000541953 ULBP2Q9BZM5 246 aa13.23□□□□□ -0.29
CLSTN3-213ENST00000541953 OR51B6Q9H340 312 aa13.23□□□□□ -0.29
CLSTN3-213ENST00000541953 ARMC7Q9H6L4 198 aa13.23□□□□□ -0.29
CLSTN3-213ENST00000541953 VAPAQ9P0L0 249 aa13.23□□□□□ -0.29
CLSTN3-213ENST00000541953 POFUT2Q9Y2G5 429 aa13.23□□□□□ -0.29
CLSTN3-213ENST00000541953 ARHGAP32A7KAX9 2087 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 TRBV5-3A0A0A0MS03 114 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 TMEM247A6NEH6 219 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 VSTM5A8MXK1 200 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 PLPP3O14495 311 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 UBDO15205 165 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 PPIHO43447 177 aaKnown RBP13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 AKAP8O43823 692 aaKnown RBP13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 CDC14BO60729 498 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 THY1P04216 161 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 FAM157BP0CG42 384 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 EGR1P18146 543 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 RBMXP38159 391 aaKnown RBP13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 PUDPQ08623 228 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 PMS2P3Q13401 168 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 OR1Q1Q15612 314 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 TRMT5Q32P41 509 aaKnown RBP13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 TMEM255AQ5JRV8 349 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 LRIF1Q5T3J3 769 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 GCNT6Q5T4J0 391 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 AVPI1Q5T686 147 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 ULK3Q6PHR2 472 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 CCDC36Q8IYA8 594 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 MIER2Q8N344 545 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 SCAIQ8N9R8 606 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 OR6N1Q8NGY5 312 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 DNAJA4Q8WW22 397 aaPredicted RBP13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 LRR1Q96L50 414 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 CACYBPQ9HB71 228 aaKnown RBP13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 SLC52A3Q9NQ40 469 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 G6PC2Q9NQR9 355 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 THUMPD1Q9NXG2 353 aaKnown RBP13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 MRPL39Q9NYK5 338 aaKnown RBP13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 DUSP13Q9UII6 198 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 CACNG2Q9Y698 323 aa13.22□□□□□ -0.29
CLSTN3-213ENST00000541953 C5orf58C9J3I9 102 aa13.21□□□□□ -0.29
CLSTN3-213ENST00000541953 C11orf98E9PRG8 122 aa13.21□□□□□ -0.29
CLSTN3-213ENST00000541953 M0R3H8 397 aa13.21□□□□□ -0.29
CLSTN3-213ENST00000541953 KCNAB3O43448 404 aa13.21□□□□□ -0.29
CLSTN3-213ENST00000541953 SPRY1O43609 319 aaPredicted RBP13.21□□□□□ -0.29
CLSTN3-213ENST00000541953 LYPD3O95274 346 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms