RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 CISD1Q9NZ45 108 aaKnown RBP13.15□□□□□ -0.3
UBE3B-212ENST00000540230 CD300AQ9UGN4 299 aa13.15□□□□□ -0.3
UBE3B-212ENST00000540230 MED31Q9Y3C7 131 aa13.15□□□□□ -0.3
UBE3B-212ENST00000540230 IGHV1-18A0A0C4DH31 117 aa13.14□□□□□ -0.31
UBE3B-212ENST00000540230 E7EQL1 145 aa13.14□□□□□ -0.31
UBE3B-212ENST00000540230 IGF2P01344 180 aa13.14□□□□□ -0.31
UBE3B-212ENST00000540230 TSPAN19P0C672 248 aa13.14□□□□□ -0.31
UBE3B-212ENST00000540230 MAKP20794 623 aa13.14□□□□□ -0.31
UBE3B-212ENST00000540230 RUNX1T1Q06455 604 aa13.14□□□□□ -0.31
UBE3B-212ENST00000540230 FXNQ16595 210 aa13.14□□□□□ -0.31
UBE3B-212ENST00000540230 SLC22A25Q6T423 547 aa13.14□□□□□ -0.31
UBE3B-212ENST00000540230 DEFB107AQ8IZN7 70 aa13.14□□□□□ -0.31
UBE3B-212ENST00000540230 MAGEE2Q8TD90 523 aaPredicted RBP13.14□□□□□ -0.31
UBE3B-212ENST00000540230 TMEM171Q8WVE6 324 aa13.14□□□□□ -0.31
UBE3B-212ENST00000540230 LIPHQ8WWY8 451 aa13.14□□□□□ -0.31
UBE3B-212ENST00000540230 LRR1Q96L50 414 aa13.14□□□□□ -0.31
UBE3B-212ENST00000540230 HS6ST2Q96MM7 605 aa13.14□□□□□ -0.31
UBE3B-212ENST00000540230 ULBP2Q9BZM5 246 aa13.14□□□□□ -0.31
UBE3B-212ENST00000540230 DCAF13Q9NV06 445 aaKnown RBP13.14□□□□□ -0.31
UBE3B-212ENST00000540230 V9GYQ6 96 aa13.14□□□□□ -0.31
UBE3B-212ENST00000540230 FLNAP21333 2647 aaKnown RBP13.14□□□□□ -0.31
UBE3B-212ENST00000540230 A0A087WUU8 490 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 ARPC4-TTLL3A0A0A6YYG9 625 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 ZNF726A6NNF4 738 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 ZNF99A8MXY4 864 aaPredicted RBP13.13□□□□□ -0.31
UBE3B-212ENST00000540230 DIRAS1O95057 198 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 WNT11O96014 354 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 CD8AP01732 235 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 HIST1H2ABP04908 130 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 IFI30P13284 250 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 HSD17B1P14061 328 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 CSNK1A1P48729 337 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 PTH2RP49190 550 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 SH3BGRP55822 239 aaPredicted RBP13.13□□□□□ -0.31
UBE3B-212ENST00000540230 UBE2NP61088 152 aaKnown RBP13.13□□□□□ -0.31
UBE3B-212ENST00000540230 VLDLRP98155 873 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 LAPTM4AQ15012 233 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 Q5PR19 223 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 GKAP1Q5VSY0 366 aaPredicted RBP13.13□□□□□ -0.31
UBE3B-212ENST00000540230 TBPL2Q6SJ96 375 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 HIST3H2AQ7L7L0 130 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 NRMQ8IXM6 262 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 LRRC75A-AS1Q8N1F1 130 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 OR6N1Q8NGY5 312 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 OR6X1Q8NH79 312 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 HIST1H2ACQ93077 130 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 TMEM54Q969K7 222 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 C7orf34Q96L11 122 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 FNDC11Q9BVV2 318 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 RPS6KA6Q9UK32 745 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 ENPP4Q9Y6X5 453 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 ATP6V1G2-DDX39BF2Z307 99 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 hCG_2039718K7EN88 272 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 CELA3BP08861 270 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 PGA4P0DJD7 388 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 PGA3P0DJD8 388 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 CDKN1AP38936 164 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 KRT72Q14CN4 511 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 TRAM2Q15035 370 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 IQCCQ4KMZ1 466 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 CCDC197Q8NCU1 140 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 HTRA1Q92743 480 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 BPIFA2Q96DR5 249 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 SLC38A2Q96QD8 506 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 GSX2Q9BZM3 304 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 GORASP2Q9H8Y8 452 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 NOX3Q9HBY0 568 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 OBP2BQ9NPH6 170 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 ZNF701Q9NV72 531 aaPredicted RBP13.13□□□□□ -0.31
UBE3B-212ENST00000540230 NDUFAF4Q9P032 175 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 CRNNQ9UBG3 495 aaPredicted RBP13.13□□□□□ -0.31
UBE3B-212ENST00000540230 POU2F3Q9UKI9 436 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 ADAM21Q9UKJ8 722 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 MOKQ9UQ07 419 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 MGAT4BQ9UQ53 548 aa13.13□□□□□ -0.31
UBE3B-212ENST00000540230 OVOL3O00110 214 aa13.12□□□□□ -0.31
UBE3B-212ENST00000540230 ARPC2O15144 300 aa13.12□□□□□ -0.31
UBE3B-212ENST00000540230 SEMG1P04279 462 aa13.12□□□□□ -0.31
UBE3B-212ENST00000540230 CECR9P0C854 216 aa13.12□□□□□ -0.31
UBE3B-212ENST00000540230 CD99P14209 185 aa13.12□□□□□ -0.31
UBE3B-212ENST00000540230 B4GALT1P15291 398 aa13.12□□□□□ -0.31
UBE3B-212ENST00000540230 RPS4XP62701 263 aaKnown RBP13.12□□□□□ -0.31
UBE3B-212ENST00000540230 MXRA7P84157 204 aa13.12□□□□□ -0.31
UBE3B-212ENST00000540230 FHL1Q13642 323 aa13.12□□□□□ -0.31
UBE3B-212ENST00000540230 SAMD4BQ5PRF9 694 aaKnown RBP13.12□□□□□ -0.31
UBE3B-212ENST00000540230 C16orf89Q6UX73 402 aa13.12□□□□□ -0.31
UBE3B-212ENST00000540230 ASB10Q8WXI3 467 aa13.12□□□□□ -0.31
UBE3B-212ENST00000540230 ACOT11Q8WXI4 607 aaPredicted RBP13.12□□□□□ -0.31
UBE3B-212ENST00000540230 ZNF566Q969W8 418 aa13.12□□□□□ -0.31
UBE3B-212ENST00000540230 SLC25A44Q96H78 314 aaPredicted RBP13.12□□□□□ -0.31
UBE3B-212ENST00000540230 RADILQ96JH8 1075 aa13.12□□□□□ -0.31
UBE3B-212ENST00000540230 ADAD1Q96M93 576 aaKnown RBP13.12□□□□□ -0.31
UBE3B-212ENST00000540230 ZNF347Q96SE7 839 aa13.12□□□□□ -0.31
UBE3B-212ENST00000540230 FOXB1Q99853 325 aa13.12□□□□□ -0.31
UBE3B-212ENST00000540230 TRAF4Q9BUZ4 470 aaPredicted RBP13.12□□□□□ -0.31
UBE3B-212ENST00000540230 NMNAT1Q9HAN9 279 aaPredicted RBP13.12□□□□□ -0.31
UBE3B-212ENST00000540230 DLL4Q9NR61 685 aa13.12□□□□□ -0.31
UBE3B-212ENST00000540230 GLTPQ9NZD2 209 aa13.12□□□□□ -0.31
UBE3B-212ENST00000540230 ZNF224Q9NZL3 707 aa13.12□□□□□ -0.31
UBE3B-212ENST00000540230 SAMD4AQ9UPU9 718 aaKnown RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms