RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 GIPRP48546 466 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 PTDSS1P48651 473 aaKnown RBP11.64□□□□□ -0.55
SS18-204ENST00000539244 SEC24CP53992 1094 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 WDR4P57081 412 aaKnown RBP11.64□□□□□ -0.55
SS18-204ENST00000539244 LMO4P61968 165 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 RAB1AP62820 205 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 GALK2Q01415 458 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 PIGFQ07326 219 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 PUDPQ08623 228 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 C6orf10Q5SRN2 563 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 CARD17Q5XLA6 110 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 NXNQ6DKJ4 435 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 PXKQ7Z7A4 578 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 LRP11Q86VZ4 500 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 WDFY1Q8IWB7 410 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 OR9I1Q8NGQ6 314 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 OR51F2Q8NH61 342 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 ZMYND19Q96E35 227 aaPredicted RBP11.64□□□□□ -0.55
SS18-204ENST00000539244 SLC47A1Q96FL8 570 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 EPYCQ99645 322 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 FOXB1Q99853 325 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 SYT3Q9BQG1 590 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 ASPNQ9BXN1 380 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 ULBP2Q9BZM5 246 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 ZNF275Q9NSD4 429 aaPredicted RBP11.64□□□□□ -0.55
SS18-204ENST00000539244 MED29Q9NX70 200 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 MRPL39Q9NYK5 338 aaKnown RBP11.64□□□□□ -0.55
SS18-204ENST00000539244 MYEF2Q9P2K5 600 aaKnown RBP11.64□□□□□ -0.55
SS18-204ENST00000539244 TESQ9UGI8 421 aaKnown RBP11.64□□□□□ -0.55
SS18-204ENST00000539244 SLC7A8Q9UHI5 535 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 POFUT2Q9Y2G5 429 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 GMEB1Q9Y692 573 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 TRAV20A0A0B4J274 112 aa11.63□□□□□ -0.55
SS18-204ENST00000539244 A0A0B4J2E0 115 aa11.63□□□□□ -0.55
SS18-204ENST00000539244 A0A1B0GX12 115 aa11.63□□□□□ -0.55
SS18-204ENST00000539244 TMEM89A2RUT3 159 aa11.63□□□□□ -0.55
SS18-204ENST00000539244 C5orf58C9J3I9 102 aa11.63□□□□□ -0.55
SS18-204ENST00000539244 WNT9BO14905 357 aa11.63□□□□□ -0.55
SS18-204ENST00000539244 SPRY1O43609 319 aaPredicted RBP11.63□□□□□ -0.55
SS18-204ENST00000539244 RAB36O95755 333 aa11.63□□□□□ -0.55
SS18-204ENST00000539244 KITP10721 976 aa11.63□□□□□ -0.55
SS18-204ENST00000539244 TCN1P20061 433 aaPredicted RBP11.63□□□□□ -0.55
SS18-204ENST00000539244 CBLP22681 906 aa11.63□□□□□ -0.55
SS18-204ENST00000539244 ARFIP2P53365 341 aa11.63□□□□□ -0.55
SS18-204ENST00000539244 AQP5P55064 265 aa11.63□□□□□ -0.55
SS18-204ENST00000539244 HILS1P60008 231 aa11.63□□□□□ -0.55
SS18-204ENST00000539244 GKAP1Q5VSY0 366 aaPredicted RBP11.63□□□□□ -0.55
SS18-204ENST00000539244 HHATQ5VTY9 493 aa11.63□□□□□ -0.55
SS18-204ENST00000539244 MAVSQ7Z434 540 aa11.63□□□□□ -0.55
SS18-204ENST00000539244 ZNF584Q8IVC4 421 aa11.63□□□□□ -0.55
SS18-204ENST00000539244 TEX29Q8N6K0 151 aa11.63□□□□□ -0.55
SS18-204ENST00000539244 ZNF418Q8TF45 676 aaPredicted RBP11.63□□□□□ -0.55
SS18-204ENST00000539244 FAM216AQ8WUB2 273 aa11.63□□□□□ -0.55
SS18-204ENST00000539244 TXNDC15Q96J42 360 aa11.63□□□□□ -0.55
SS18-204ENST00000539244 MOGAT1Q96PD6 335 aa11.63□□□□□ -0.55
SS18-204ENST00000539244 LRRC37BQ96QE4 947 aa11.63□□□□□ -0.55
SS18-204ENST00000539244 PAIP2Q9BPZ3 127 aaKnown RBP11.63□□□□□ -0.55
SS18-204ENST00000539244 ZNF416Q9BWM5 594 aa11.63□□□□□ -0.55
SS18-204ENST00000539244 ZNF346Q9UL40 294 aaKnown RBP11.63□□□□□ -0.55
SS18-204ENST00000539244 ZNF726A6NNF4 738 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 PLPP3O14495 311 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 UBDO15205 165 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 WIPF1O43516 503 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 TPST1O60507 370 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 PNPP00491 289 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 SERPINA5P05154 406 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 MRPL19P49406 292 aaKnown RBP11.62□□□□□ -0.55
SS18-204ENST00000539244 PMS2P3Q13401 168 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 CAMK2DQ13557 499 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 MAD2L1BPQ15013 274 aaPredicted RBP11.62□□□□□ -0.55
SS18-204ENST00000539244 MMEL1Q495T6 779 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 GLIPR1L2Q4G1C9 344 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 CEP85LQ5SZL2 805 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 LRIF1Q5T3J3 769 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 SWT1Q5T5J6 900 aaKnown RBP11.62□□□□□ -0.55
SS18-204ENST00000539244 REEP3Q6NUK4 255 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 SHQ1Q6PI26 577 aaKnown RBP11.62□□□□□ -0.55
SS18-204ENST00000539244 C1orf229Q6ZS94 237 aaPredicted RBP11.62□□□□□ -0.55
SS18-204ENST00000539244 PIWIL3Q7Z3Z3 882 aaKnown RBP11.62□□□□□ -0.55
SS18-204ENST00000539244 CROCCP2Q86T23 111 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 MSRB3Q8IXL7 192 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 MIER2Q8N344 545 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 GOLGA6L1Q8N7Z2 621 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 BHLHE22Q8NFJ8 381 aaPredicted RBP11.62□□□□□ -0.55
SS18-204ENST00000539244 OR6N1Q8NGY5 312 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 MGARPQ8TDB4 240 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 OR52B2Q96RD2 323 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 TMEM43Q9BTV4 400 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 SPATA5L1Q9BVQ7 753 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 CENPHQ9H3R5 247 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 NARFLQ9H6Q4 476 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 EVA1AQ9H8M9 152 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 G6PC2Q9NQR9 355 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 SLC25A37Q9NYZ2 338 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 TREM2Q9NZC2 230 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 PCDHB10Q9UN67 800 aa11.62□□□□□ -0.55
SS18-204ENST00000539244 IGLV3-9A0A075B6K5 115 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 PPIHO43447 177 aaKnown RBP11.61□□□□□ -0.55
SS18-204ENST00000539244 TPST2O60704 377 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 MT-ATP6P00846 226 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms