RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 ZNF33BQ06732 778 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 ILF2Q12905 390 aaKnown RBP2.84□□□□□ -1.95
USP48-215ENST00000534705 GK3PQ14409 553 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 DMC1Q14565 340 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 ZNF846Q147U1 533 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 STK11Q15831 433 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 TRIM16LQ309B1 348 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 BRMS1LQ5PSV4 323 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 TCHHL1Q5QJ38 904 aaPredicted RBP2.84□□□□□ -1.95
USP48-215ENST00000534705 RABGAP1LQ5R372 815 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 CLVS2Q5SYC1 327 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 LCE3EQ5T5B0 92 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 LPCAT4Q643R3 524 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 KDM4DQ6B0I6 523 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 SULT1C3Q6IMI6 304 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 ZFP1Q6P2D0 407 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 CD164L2Q6UWJ8 174 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 TPGS1Q6ZTW0 290 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 FAM183BPQ6ZVS7 135 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 P2RY8Q86VZ1 359 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 ZNF683Q8IZ20 524 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 DEFB106AQ8N104 65 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 ARL14Q8N4G2 192 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 KLHDC1Q8N7A1 406 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 ICA1LQ8NDH6 482 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 ZNF680Q8NEM1 530 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 OR13F1Q8NGS4 319 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 GRPEL2Q8TAA5 225 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 ENKURQ8TC29 256 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 ESAMQ96AP7 390 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 CIDECQ96AQ7 238 aaPredicted RBP2.84□□□□□ -1.95
USP48-215ENST00000534705 MCUR1Q96AQ8 359 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 ZNF607Q96SK3 696 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 NPY6RQ99463 290 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 GABRG3Q99928 467 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 ZNF559Q9BR84 538 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 C1orf50Q9BV19 199 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 KIFC1Q9BW19 673 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 OSBPL11Q9BXB4 747 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 ACTL8Q9H568 366 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 NTN4Q9HB63 628 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 POPDC2Q9HBU9 364 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 DNAJC4Q9NNZ3 241 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 TIGARQ9NQ88 270 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 C8orf4Q9NR00 106 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 NKIRAS1Q9NYS0 192 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 STMN3Q9NZ72 180 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 NEU3Q9UQ49 428 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 ENTPD4Q9Y227 616 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 POMPQ9Y244 141 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 ACOT9Q9Y305 439 aa2.84□□□□□ -1.95
USP48-215ENST00000534705 FER1L5A0AVI2 2057 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 MDC1Q14676 2089 aaKnown RBP2.83□□□□□ -1.96
USP48-215ENST00000534705 HEATR5BQ9P2D3 2071 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 TRAV6A0A075B6T7 132 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 A0A087X0K7 114 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 TMEM129A0AVI4 362 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 OR6C65A6NJZ3 312 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 PCP4L1A6NKN8 68 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 SNURFLB1AK76 121 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 TMEM150CB9EJG8 249 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 TMX2-CTNND1H3BSU7 103 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 J3QRK9 145 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 PSMD11O00231 422 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 DLGAP1O14490 977 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 MED7O43513 233 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 SNNO75324 88 aaPredicted RBP2.83□□□□□ -1.96
USP48-215ENST00000534705 CSO75390 466 aaKnown RBP2.83□□□□□ -1.96
USP48-215ENST00000534705 RHBDL1O75783 438 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 GRAP2O75791 330 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 KLF8O95600 359 aaPredicted RBP2.83□□□□□ -1.96
USP48-215ENST00000534705 APODP05090 189 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 S100A9P06702 114 aaKnown RBP2.83□□□□□ -1.96
USP48-215ENST00000534705 YES1P07947 543 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 SFTPBP07988 381 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 SERPINA6P08185 405 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 GABRG2P18507 467 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 CD40LGP29965 261 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 AKT2P31751 481 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 CD70P32970 193 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 TRIM23P36406 574 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 COILP38432 576 aaPredicted RBP2.83□□□□□ -1.96
USP48-215ENST00000534705 P2RY2P41231 377 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 MATKP42679 507 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 GNPDA1P46926 289 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 PLTPP55058 493 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 XGP55808 180 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 RPS24P62847 133 aaKnown RBP2.83□□□□□ -1.96
USP48-215ENST00000534705 OGDHQ02218 1023 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 IL10RBQ08334 325 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 RIGQ13278 110 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 NAB1Q13506 487 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 RFTN1Q14699 578 aaPredicted RBP2.83□□□□□ -1.96
USP48-215ENST00000534705 OPCMLQ14982 345 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 TRIP13Q15645 432 aaPredicted RBP2.83□□□□□ -1.96
USP48-215ENST00000534705 TEX44Q53QW1 395 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 Q5BKY6 102 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 MS4A13Q5J8X5 152 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 FGD3Q5JSP0 725 aa2.83□□□□□ -1.96
USP48-215ENST00000534705 LDLRAP1Q5SW96 308 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms