RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 MYL12BO14950 172 aa19■□□□□ 0.63
VPS28-212ENST00000530836 DNPH1O43598 174 aa19■□□□□ 0.63
VPS28-212ENST00000530836 EIF1BO60739 113 aaKnown RBP19■□□□□ 0.63
VPS28-212ENST00000530836 PSMB9P28065 219 aa19■□□□□ 0.63
VPS28-212ENST00000530836 SLC16A1P53985 500 aa19■□□□□ 0.63
VPS28-212ENST00000530836 OR2B6P58173 313 aa19■□□□□ 0.63
VPS28-212ENST00000530836 FOXK1P85037 733 aa19■□□□□ 0.63
VPS28-212ENST00000530836 NFATC3Q12968 1075 aa19■□□□□ 0.63
VPS28-212ENST00000530836 ACKR1Q16570 336 aa19■□□□□ 0.63
VPS28-212ENST00000530836 HYAL4Q2M3T9 481 aa19■□□□□ 0.63
VPS28-212ENST00000530836 MS4A18Q3C1V0 323 aa19■□□□□ 0.63
VPS28-212ENST00000530836 PLEKHN1Q494U1 663 aaPredicted RBP19■□□□□ 0.63
VPS28-212ENST00000530836 B3GNT6Q6ZMB0 384 aa19■□□□□ 0.63
VPS28-212ENST00000530836 NANOGP1Q8N7R0 232 aa19■□□□□ 0.63
VPS28-212ENST00000530836 POMGNT2Q8NAT1 580 aa19■□□□□ 0.63
VPS28-212ENST00000530836 TMEM178AQ8NBL3 297 aa19■□□□□ 0.63
VPS28-212ENST00000530836 FAM83FQ8NEG4 500 aaPredicted RBP19■□□□□ 0.63
VPS28-212ENST00000530836 PNPLA2Q96AD5 504 aa19■□□□□ 0.63
VPS28-212ENST00000530836 COG8Q96MW5 612 aa19■□□□□ 0.63
VPS28-212ENST00000530836 TMEM185BQ9H7F4 350 aa19■□□□□ 0.63
VPS28-212ENST00000530836 QPCTLQ9NXS2 382 aa19■□□□□ 0.63
VPS28-212ENST00000530836 TNRC6AQ8NDV7 1962 aaKnown RBP19■□□□□ 0.63
VPS28-212ENST00000530836 TRAV17A0A0B4J275 112 aa19■□□□□ 0.63
VPS28-212ENST00000530836 TMEM129A0AVI4 362 aa19■□□□□ 0.63
VPS28-212ENST00000530836 CCDC182A6NF36 153 aa19■□□□□ 0.63
VPS28-212ENST00000530836 A6NIZ1 184 aa19■□□□□ 0.63
VPS28-212ENST00000530836 NOL3O60936 208 aaKnown RBP19■□□□□ 0.63
VPS28-212ENST00000530836 IGHA1P01876 353 aa19■□□□□ 0.63
VPS28-212ENST00000530836 RFPL3SP0C7P2 107 aa19■□□□□ 0.63
VPS28-212ENST00000530836 SFTPDP35247 375 aa19■□□□□ 0.63
VPS28-212ENST00000530836 CDKN2AP42771 156 aaKnown RBP19■□□□□ 0.63
VPS28-212ENST00000530836 DIO1P49895 249 aa19■□□□□ 0.63
VPS28-212ENST00000530836 TMBIM6P55061 237 aa19■□□□□ 0.63
VPS28-212ENST00000530836 B3GALT5-AS1P59052 145 aa19■□□□□ 0.63
VPS28-212ENST00000530836 RAP1BP61224 184 aa19■□□□□ 0.63
VPS28-212ENST00000530836 RAP1AP62834 184 aa19■□□□□ 0.63
VPS28-212ENST00000530836 CLVS1Q8IUQ0 354 aaPredicted RBP19■□□□□ 0.63
VPS28-212ENST00000530836 KISS1RQ969F8 398 aaPredicted RBP19■□□□□ 0.63
VPS28-212ENST00000530836 NOX1Q9Y5S8 564 aa19■□□□□ 0.63
VPS28-212ENST00000530836 LOC102725191A0A1B0GVB3 256 aa18.99■□□□□ 0.63
VPS28-212ENST00000530836 PINLYPA6NC86 204 aa18.99■□□□□ 0.63
VPS28-212ENST00000530836 OR6C68A6NDL8 312 aa18.99■□□□□ 0.63
VPS28-212ENST00000530836 TRAPPC6AO75865 159 aa18.99■□□□□ 0.63
VPS28-212ENST00000530836 PTHP01270 115 aa18.99■□□□□ 0.63
VPS28-212ENST00000530836 HPNP05981 417 aa18.99■□□□□ 0.63
VPS28-212ENST00000530836 LCKP06239 509 aa18.99■□□□□ 0.63
VPS28-212ENST00000530836 CENPAP49450 140 aa18.99■□□□□ 0.63
VPS28-212ENST00000530836 GGTLC2Q14390 218 aa18.99■□□□□ 0.63
VPS28-212ENST00000530836 ZNF169Q14929 603 aaPredicted RBP18.99■□□□□ 0.63
VPS28-212ENST00000530836 TIGD6Q17RP2 521 aa18.99■□□□□ 0.63
VPS28-212ENST00000530836 MESTQ5EB52 335 aa18.99■□□□□ 0.63
VPS28-212ENST00000530836 PAQR6Q6TCH4 344 aa18.99■□□□□ 0.63
VPS28-212ENST00000530836 OR2T4Q8NH00 348 aa18.99■□□□□ 0.63
VPS28-212ENST00000530836 ZNF519Q8TB69 540 aa18.99■□□□□ 0.63
VPS28-212ENST00000530836 SCMH1Q96GD3 660 aa18.99■□□□□ 0.63
VPS28-212ENST00000530836 KLHL15Q96M94 604 aa18.99■□□□□ 0.63
VPS28-212ENST00000530836 SFXN2Q96NB2 322 aa18.99■□□□□ 0.63
VPS28-212ENST00000530836 BCL7BQ9BQE9 202 aa18.99■□□□□ 0.63
VPS28-212ENST00000530836 ZNF703Q9H7S9 590 aaPredicted RBP18.99■□□□□ 0.63
VPS28-212ENST00000530836 SMG1Q96Q15 3661 aaKnown RBP18.99■□□□□ 0.63
VPS28-212ENST00000530836 A0A1W2PNR3 127 aa18.98■□□□□ 0.63
VPS28-212ENST00000530836 NPIPA5E9PKD4 350 aa18.98■□□□□ 0.63
VPS28-212ENST00000530836 J3QRE1 110 aa18.98■□□□□ 0.63
VPS28-212ENST00000530836 AHCYL1O43865 530 aa18.98■□□□□ 0.63
VPS28-212ENST00000530836 AKR7A3O95154 331 aa18.98■□□□□ 0.63
VPS28-212ENST00000530836 SPI1P17947 270 aa18.98■□□□□ 0.63
VPS28-212ENST00000530836 GSTT1P30711 240 aa18.98■□□□□ 0.63
VPS28-212ENST00000530836 ACVR1BP36896 505 aa18.98■□□□□ 0.63
VPS28-212ENST00000530836 ACTC1P68032 377 aa18.98■□□□□ 0.63
VPS28-212ENST00000530836 ACTA1P68133 377 aa18.98■□□□□ 0.63
VPS28-212ENST00000530836 SPHARQ15513 63 aa18.98■□□□□ 0.63
VPS28-212ENST00000530836 GPR107Q5VW38 600 aa18.98■□□□□ 0.63
VPS28-212ENST00000530836 HDDC2Q7Z4H3 204 aa18.98■□□□□ 0.63
VPS28-212ENST00000530836 YRDCQ86U90 279 aaKnown RBP18.98■□□□□ 0.63
VPS28-212ENST00000530836 ACBD7Q8N6N7 88 aa18.98■□□□□ 0.63
VPS28-212ENST00000530836 OR51G2Q8NGK0 314 aa18.98■□□□□ 0.63
VPS28-212ENST00000530836 NAA11Q9BSU3 229 aaPredicted RBP18.98■□□□□ 0.63
VPS28-212ENST00000530836 NPIPA1Q9UND3 350 aa18.98■□□□□ 0.63
VPS28-212ENST00000530836 AQP7P3A6NL99 342 aa18.97■□□□□ 0.63
VPS28-212ENST00000530836 SERPINI2O75830 405 aa18.97■□□□□ 0.63
VPS28-212ENST00000530836 GLCEO94923 617 aa18.97■□□□□ 0.63
VPS28-212ENST00000530836 VAMP5O95183 116 aa18.97■□□□□ 0.63
VPS28-212ENST00000530836 BCL10O95999 233 aa18.97■□□□□ 0.63
VPS28-212ENST00000530836 SHC1P29353 583 aa18.97■□□□□ 0.63
VPS28-212ENST00000530836 HSF1Q00613 529 aa18.97■□□□□ 0.63
VPS28-212ENST00000530836 MED22Q15528 200 aa18.97■□□□□ 0.63
VPS28-212ENST00000530836 ZNF766Q5HY98 468 aa18.97■□□□□ 0.63
VPS28-212ENST00000530836 GALNTL5Q7Z4T8 443 aa18.97■□□□□ 0.63
VPS28-212ENST00000530836 OR4F15Q8NGB8 312 aa18.97■□□□□ 0.63
VPS28-212ENST00000530836 OR9Q1Q8NGQ5 310 aa18.97■□□□□ 0.63
VPS28-212ENST00000530836 RAB2BQ8WUD1 216 aa18.97■□□□□ 0.63
VPS28-212ENST00000530836 ZHX1-C8orf76Q96EF9 292 aa18.97■□□□□ 0.63
VPS28-212ENST00000530836 MYCBPQ99417 103 aaPredicted RBP18.97■□□□□ 0.63
VPS28-212ENST00000530836 DOK1Q99704 481 aa18.97■□□□□ 0.63
VPS28-212ENST00000530836 TTTY12Q9BZ98 90 aa18.97■□□□□ 0.63
VPS28-212ENST00000530836 VSX1Q9NZR4 365 aaPredicted RBP18.97■□□□□ 0.63
VPS28-212ENST00000530836 RASD1Q9Y272 281 aa18.97■□□□□ 0.63
VPS28-212ENST00000530836 ARHGEF9O43307 516 aa18.96■□□□□ 0.63
VPS28-212ENST00000530836 PLGP00747 810 aaPredicted RBP18.96■□□□□ 0.63
VPS28-212ENST00000530836 PRB1P04280 392 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms