RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 FOXK1P85037 733 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 DNASE1L3Q13609 305 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 ZNF684Q5T5D7 378 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 ZNF468Q5VIY5 522 aaPredicted RBP18.63■□□□□ 0.57
VPS28-209ENST00000528142 ASCL5Q7RTU5 278 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 TMEM156Q8N614 296 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 SNX33Q8WV41 574 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 SMURF1Q9HCE7 757 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 P4HTMQ9NXG6 502 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 PLEKHB1Q9UF11 243 aaPredicted RBP18.63■□□□□ 0.57
VPS28-209ENST00000528142 GRIP1Q9Y3R0 1128 aa18.63■□□□□ 0.57
VPS28-209ENST00000528142 SHISA3A0PJX4 238 aa18.62■□□□□ 0.57
VPS28-209ENST00000528142 DVL2O14641 736 aa18.62■□□□□ 0.57
VPS28-209ENST00000528142 TRIM3O75382 744 aaPredicted RBP18.62■□□□□ 0.57
VPS28-209ENST00000528142 ADH6P28332 368 aa18.62■□□□□ 0.57
VPS28-209ENST00000528142 ETV6P41212 452 aa18.62■□□□□ 0.57
VPS28-209ENST00000528142 TRIP6Q15654 476 aaKnown RBP18.62■□□□□ 0.57
VPS28-209ENST00000528142 GLYR1Q49A26 553 aaPredicted RBP18.62■□□□□ 0.57
VPS28-209ENST00000528142 SLC22A10Q63ZE4 541 aa18.62■□□□□ 0.57
VPS28-209ENST00000528142 KDM8Q8N371 416 aa18.62■□□□□ 0.57
VPS28-209ENST00000528142 DEFB124Q8NES8 71 aa18.62■□□□□ 0.57
VPS28-209ENST00000528142 GPR87Q9BY21 358 aa18.62■□□□□ 0.57
VPS28-209ENST00000528142 MARCH7Q9H992 704 aa18.62■□□□□ 0.57
VPS28-209ENST00000528142 CHST11Q9NPF2 352 aa18.62■□□□□ 0.57
VPS28-209ENST00000528142 FANCFQ9NPI8 374 aa18.62■□□□□ 0.57
VPS28-209ENST00000528142 HPF1Q9NWY4 346 aa18.62■□□□□ 0.57
VPS28-209ENST00000528142 ALKBH4Q9NXW9 302 aa18.62■□□□□ 0.57
VPS28-209ENST00000528142 FKBP7Q9Y680 259 aa18.62■□□□□ 0.57
VPS28-209ENST00000528142 A0A1W2PRG6 482 aa18.61■□□□□ 0.57
VPS28-209ENST00000528142 PRR32B1ATL7 298 aa18.61■□□□□ 0.57
VPS28-209ENST00000528142 FAM47E-STBD1D6RA91 191 aa18.61■□□□□ 0.57
VPS28-209ENST00000528142 CD40LGP29965 261 aa18.61■□□□□ 0.57
VPS28-209ENST00000528142 EIF1P41567 113 aaKnown RBP18.61■□□□□ 0.57
VPS28-209ENST00000528142 GBX2P52951 348 aaPredicted RBP18.61■□□□□ 0.57
VPS28-209ENST00000528142 IFITM3Q01628 133 aa18.61■□□□□ 0.57
VPS28-209ENST00000528142 HNRNPA0Q13151 305 aaKnown RBP18.61■□□□□ 0.57
VPS28-209ENST00000528142 MYBPHQ13203 477 aa18.61■□□□□ 0.57
VPS28-209ENST00000528142 TRAM1Q15629 374 aa18.61■□□□□ 0.57
VPS28-209ENST00000528142 C3orf33Q6P1S2 294 aa18.61■□□□□ 0.57
VPS28-209ENST00000528142 GLRX5Q86SX6 157 aa18.61■□□□□ 0.57
VPS28-209ENST00000528142 CCDC190Q86UF4 302 aa18.61■□□□□ 0.57
VPS28-209ENST00000528142 CDC20BQ86Y33 519 aa18.61■□□□□ 0.57
VPS28-209ENST00000528142 NLGN4YQ8NFZ3 816 aaPredicted RBP18.61■□□□□ 0.57
VPS28-209ENST00000528142 OR5M1Q8NGP8 315 aa18.61■□□□□ 0.57
VPS28-209ENST00000528142 NEIL3Q8TAT5 605 aa18.61■□□□□ 0.57
VPS28-209ENST00000528142 MRPL48Q96GC5 212 aaKnown RBP18.61■□□□□ 0.57
VPS28-209ENST00000528142 B9D1Q9UPM9 204 aa18.61■□□□□ 0.57
VPS28-209ENST00000528142 PCSK5Q92824 1860 aa18.61■□□□□ 0.57
VPS28-209ENST00000528142 RIF1Q5UIP0 2472 aaKnown RBP18.61■□□□□ 0.57
VPS28-209ENST00000528142 ANKRD33BA6NCL7 494 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 NPIPB13A6NJU9 1138 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 C21orf140B9A014 251 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 NPIPB4C9JG80 1138 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 SNPHO15079 494 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 SC5DO75845 299 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 SERPINA7P05543 415 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 GTF2E2P29084 291 aaKnown RBP18.6■□□□□ 0.57
VPS28-209ENST00000528142 SIRPAP78324 504 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 ZNF45Q02386 682 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 RUNX1T1Q06455 604 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 SLC3A1Q07837 685 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 ZNF248Q8NDW4 579 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 ABHD4Q8TB40 342 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 ZBTB8AQ96BR9 441 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 B3GALT5Q9Y2C3 310 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 KLHDC2Q9Y2U9 406 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 CPAMD8Q8IZJ3 1885 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 A0A087WZY1 265 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 SLC22A23A1A5C7 686 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 TVP23AA6NH52 213 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 PROB1E7EW31 1015 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 AKR7A3O95154 331 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 TCEA1P23193 301 aaKnown RBP18.6■□□□□ 0.57
VPS28-209ENST00000528142 TLE3Q04726 772 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 C19orf57Q0VDD7 668 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 MELKQ14680 651 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 CDK5R1Q15078 307 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 GHSRQ92847 366 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 SGCZQ96LD1 299 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 IRF2BPLQ9H1B7 796 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 KCNN2Q9H2S1 579 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 ACOXLQ9NUZ1 547 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 GNG8Q9UK08 70 aa18.6■□□□□ 0.57
VPS28-209ENST00000528142 IGLV1-36A0A0B4J1U3 117 aa18.59■□□□□ 0.57
VPS28-209ENST00000528142 SULT1C4O75897 302 aa18.59■□□□□ 0.57
VPS28-209ENST00000528142 CD1AP06126 327 aa18.59■□□□□ 0.57
VPS28-209ENST00000528142 LIFP15018 202 aa18.59■□□□□ 0.57
VPS28-209ENST00000528142 ZNF12P17014 697 aa18.59■□□□□ 0.57
VPS28-209ENST00000528142 DLSTP36957 453 aa18.59■□□□□ 0.57
VPS28-209ENST00000528142 CCDC58Q4VC31 144 aa18.59■□□□□ 0.57
VPS28-209ENST00000528142 B3GNTL1Q67FW5 361 aaPredicted RBP18.59■□□□□ 0.57
VPS28-209ENST00000528142 RPL22L1Q6P5R6 122 aaKnown RBP18.59■□□□□ 0.57
VPS28-209ENST00000528142 NHLRC1Q6VVB1 395 aa18.59■□□□□ 0.57
VPS28-209ENST00000528142 EGFL6Q8IUX8 553 aa18.59■□□□□ 0.57
VPS28-209ENST00000528142 PARP16Q8N5Y8 322 aa18.59■□□□□ 0.57
VPS28-209ENST00000528142 RNF166Q96A37 237 aaPredicted RBP18.59■□□□□ 0.57
VPS28-209ENST00000528142 MNTQ99583 582 aa18.59■□□□□ 0.57
VPS28-209ENST00000528142 WDR76Q9H967 626 aa18.59■□□□□ 0.57
VPS28-209ENST00000528142 SDK2Q58EX2 2172 aa18.59■□□□□ 0.57
VPS28-209ENST00000528142 CASKO14936 926 aa18.58■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms