RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 LIMS1P48059 325 aa9.12□□□□□ -0.95
CPSF1-203ENST00000527916 CDH15P55291 814 aa9.12□□□□□ -0.95
CPSF1-203ENST00000527916 CLDN17P56750 224 aa9.12□□□□□ -0.95
CPSF1-203ENST00000527916 ROR2Q01974 943 aaKnown RBP9.12□□□□□ -0.95
CPSF1-203ENST00000527916 C1DQ13901 141 aaKnown RBP9.12□□□□□ -0.95
CPSF1-203ENST00000527916 NFYCQ13952 458 aa9.12□□□□□ -0.95
CPSF1-203ENST00000527916 MST1LQ2TV78 715 aa9.12□□□□□ -0.95
CPSF1-203ENST00000527916 HIKESHIQ53FT3 197 aa9.12□□□□□ -0.95
CPSF1-203ENST00000527916 NHLRC1Q6VVB1 395 aa9.12□□□□□ -0.95
CPSF1-203ENST00000527916 LINGO2Q7L985 606 aa9.12□□□□□ -0.95
CPSF1-203ENST00000527916 PATL1Q86TB9 770 aaKnown RBP9.12□□□□□ -0.95
CPSF1-203ENST00000527916 LSRQ86X29 649 aaPredicted RBP9.12□□□□□ -0.95
CPSF1-203ENST00000527916 CCDC36Q8IYA8 594 aa9.12□□□□□ -0.95
CPSF1-203ENST00000527916 PIK3C3Q8NEB9 887 aa9.12□□□□□ -0.95
CPSF1-203ENST00000527916 ZNF417Q8TAU3 575 aa9.12□□□□□ -0.95
CPSF1-203ENST00000527916 RASSF5Q8WWW0 418 aa9.12□□□□□ -0.95
CPSF1-203ENST00000527916 THOC1Q96FV9 657 aaKnown RBP9.12□□□□□ -0.95
CPSF1-203ENST00000527916 SNX18Q96RF0 628 aa9.12□□□□□ -0.95
CPSF1-203ENST00000527916 ZNF587Q96SQ5 575 aaPredicted RBP9.12□□□□□ -0.95
CPSF1-203ENST00000527916 ARHGDIGQ99819 225 aa9.12□□□□□ -0.95
CPSF1-203ENST00000527916 SH3GL1Q99961 368 aa9.12□□□□□ -0.95
CPSF1-203ENST00000527916 KCNS3Q9BQ31 491 aa9.12□□□□□ -0.95
CPSF1-203ENST00000527916 KATNB1Q9BVA0 655 aa9.12□□□□□ -0.95
CPSF1-203ENST00000527916 NPHS2Q9NP85 383 aa9.12□□□□□ -0.95
CPSF1-203ENST00000527916 SEC14L4Q9UDX3 406 aa9.12□□□□□ -0.95
CPSF1-203ENST00000527916 PCDHB10Q9UN67 800 aa9.12□□□□□ -0.95
CPSF1-203ENST00000527916 VWFP04275 2813 aa9.12□□□□□ -0.95
CPSF1-203ENST00000527916 IGHV1-18A0A0C4DH31 117 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 A0A0G2JND7 137 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 B4DSR2 109 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 B9A039 149 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 ATP6V1G2-DDX39BF2Z307 99 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 TRAF3IP2O43734 574 aaPredicted RBP9.11□□□□□ -0.95
CPSF1-203ENST00000527916 SASH3O75995 380 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 STAMBPO95630 424 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 MT-ATP6P00846 226 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 IGKV3-15P01624 115 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 BGLAPP02818 100 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 CBR1P16152 277 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 AQP1P29972 269 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 PCGF2P35227 344 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 GZMMP51124 257 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 IDH3GP51553 393 aaPredicted RBP9.11□□□□□ -0.95
CPSF1-203ENST00000527916 CDH12P55289 794 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 MTPNP58546 118 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 UBE2NP61088 152 aaKnown RBP9.11□□□□□ -0.95
CPSF1-203ENST00000527916 CYLC2Q14093 348 aaPredicted RBP9.11□□□□□ -0.95
CPSF1-203ENST00000527916 CYP51A1Q16850 503 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 COQ5Q5HYK3 327 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 INTS11Q5TA45 600 aaKnown RBP9.11□□□□□ -0.95
CPSF1-203ENST00000527916 NANOGP8Q6NSW7 305 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 USP43Q70EL4 1123 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 CCDC80Q76M96 950 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 PXKQ7Z7A4 578 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 PEG10Q86TG7 708 aaKnown RBP9.11□□□□□ -0.95
CPSF1-203ENST00000527916 GLCCI1Q86VQ1 547 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 TMEM123Q8N131 208 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 TEX29Q8N6K0 151 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 GPR32P1Q8NGA4 272 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 ALKBH3Q96Q83 286 aaPredicted RBP9.11□□□□□ -0.95
CPSF1-203ENST00000527916 SLC38A2Q96QD8 506 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 OR2M2Q96R28 347 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 MCHR1Q99705 422 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 WFDC6Q9BQY6 131 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 ASPNQ9BXN1 380 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 PCDHAC1Q9H158 963 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 NELFAQ9H3P2 528 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 NANOGQ9H9S0 305 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 GPR35Q9HC97 309 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 MRPL39Q9NYK5 338 aaKnown RBP9.11□□□□□ -0.95
CPSF1-203ENST00000527916 MOKQ9UQ07 419 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 NOX1Q9Y5S8 564 aa9.11□□□□□ -0.95
CPSF1-203ENST00000527916 ZNF99A8MXY4 864 aaPredicted RBP9.1□□□□□ -0.95
CPSF1-203ENST00000527916 FBP2O00757 339 aa9.1□□□□□ -0.95
CPSF1-203ENST00000527916 PLPP3O14495 311 aa9.1□□□□□ -0.95
CPSF1-203ENST00000527916 TMPRSS2O15393 492 aa9.1□□□□□ -0.95
CPSF1-203ENST00000527916 CHP2O43745 196 aa9.1□□□□□ -0.95
CPSF1-203ENST00000527916 LILRA1O75019 489 aa9.1□□□□□ -0.95
CPSF1-203ENST00000527916 PDE5AO76074 875 aa9.1□□□□□ -0.95
CPSF1-203ENST00000527916 CRYAAP02489 173 aa9.1□□□□□ -0.95
CPSF1-203ENST00000527916 TROVE2P10155 538 aaKnown RBP eCLIP9.1□□□□□ -0.95
CPSF1-203ENST00000527916 DAOP14920 347 aa9.1□□□□□ -0.95
CPSF1-203ENST00000527916 NQO1P15559 274 aaKnown RBP9.1□□□□□ -0.95
CPSF1-203ENST00000527916 IL2RGP31785 369 aa9.1□□□□□ -0.95
CPSF1-203ENST00000527916 PPOXP50336 477 aa9.1□□□□□ -0.95
CPSF1-203ENST00000527916 HILS1P60008 231 aa9.1□□□□□ -0.95
CPSF1-203ENST00000527916 ARF1P84077 181 aaKnown RBP9.1□□□□□ -0.95
CPSF1-203ENST00000527916 NAAAQ02083 359 aa9.1□□□□□ -0.95
CPSF1-203ENST00000527916 PUDPQ08623 228 aa9.1□□□□□ -0.95
CPSF1-203ENST00000527916 PMS2P3Q13401 168 aa9.1□□□□□ -0.95
CPSF1-203ENST00000527916 SELPLGQ14242 412 aa9.1□□□□□ -0.95
CPSF1-203ENST00000527916 VMACQ2NL98 169 aa9.1□□□□□ -0.95
CPSF1-203ENST00000527916 TRMT5Q32P41 509 aaKnown RBP9.1□□□□□ -0.95
CPSF1-203ENST00000527916 AWAT1Q58HT5 328 aa9.1□□□□□ -0.95
CPSF1-203ENST00000527916 ENTPD8Q5MY95 495 aa9.1□□□□□ -0.95
CPSF1-203ENST00000527916 SHISA2Q6UWI4 295 aa9.1□□□□□ -0.95
CPSF1-203ENST00000527916 ZNF627Q7L945 461 aa9.1□□□□□ -0.95
CPSF1-203ENST00000527916 UEVLDQ8IX04 471 aa9.1□□□□□ -0.95
CPSF1-203ENST00000527916 C20orf196Q8IYI0 205 aa9.1□□□□□ -0.95
CPSF1-203ENST00000527916 GPR137CQ8N3F9 429 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms