RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 TEX47Q8TBZ9 253 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 RDH12Q96NR8 316 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 OXGR1Q96P68 337 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 ZNF385AQ96PM9 386 aaKnown RBP13.59□□□□□ -0.23
LSM1-203ENST00000520755 SF3B5Q9BWJ5 86 aaKnown RBP13.59□□□□□ -0.23
LSM1-203ENST00000520755 TSSK6Q9BXA6 273 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 GRIP2Q9C0E4 1043 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 SLC25A19Q9HC21 320 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 INIPQ9NRY2 104 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 FLVCR1Q9Y5Y0 555 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 CACNA1CQ13936 2221 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 HCFC1P51610 2035 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 VAMP5O95183 116 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 OR6A2O95222 327 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 CD14P08571 375 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 POU1F1P28069 291 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 CTXN1P60606 82 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 ERVK-25P63136 954 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 CDK5Q00535 292 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 TOP3AQ13472 1001 aaPredicted RBP13.58□□□□□ -0.24
LSM1-203ENST00000520755 MELKQ14680 651 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 PDK3Q15120 406 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 PTGES3Q15185 160 aaKnown RBP13.58□□□□□ -0.24
LSM1-203ENST00000520755 ACKR1Q16570 336 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 PGGHGQ32M88 737 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 EEF1A1P5Q5VTE0 462 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 ACSM5Q6NUN0 579 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 DPY19L2P2Q6ZN68 376 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 CREB3L2Q70SY1 520 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 BTLAQ7Z6A9 289 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 UEVLDQ8IX04 471 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 LNX2Q8N448 690 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 ANKK1Q8NFD2 765 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 OR52L1Q8NGH7 329 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 OR6K3Q8NGY3 331 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 ZNF519Q8TB69 540 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 ASB10Q8WXI3 467 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 RASD2Q96D21 266 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 STARD4Q96DR4 205 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 TXNDC15Q96J42 360 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 ZNF570Q96NI8 536 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 PITX2Q99697 317 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 POLDIP3Q9BY77 421 aaKnown RBP13.58□□□□□ -0.24
LSM1-203ENST00000520755 RASSF4Q9H2L5 321 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 BCO1Q9HAY6 547 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 GP6Q9HCN6 339 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 MED29Q9NX70 200 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 EMC3Q9P0I2 261 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 ORC6Q9Y5N6 252 aa13.58□□□□□ -0.24
LSM1-203ENST00000520755 FASNP49327 2511 aaKnown RBP13.58□□□□□ -0.24
LSM1-203ENST00000520755 A1L4Q6 167 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 NPIPB13A6NJU9 1138 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 NPIPB4C9JG80 1138 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 H0YJX3 145 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 M0R129 80 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 IFNGR1P15260 489 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 EDNRAP25101 427 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 RPL4P36578 427 aaKnown RBP13.57□□□□□ -0.24
LSM1-203ENST00000520755 GINS1Q14691 196 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 SLC25A35Q3KQZ1 300 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 MESTQ5EB52 335 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 ARMC4Q5T2S8 1044 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 SLX4IPQ5VYV7 408 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 C12orf73Q69YU5 71 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 SLC35D2Q76EJ3 337 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 NUFIP2Q7Z417 695 aaKnown RBP13.57□□□□□ -0.24
LSM1-203ENST00000520755 LUZP2Q86TE4 346 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 OR2T33Q8NG76 320 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 Q96M85 177 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 TACO1Q9BSH4 297 aaKnown RBP13.57□□□□□ -0.24
LSM1-203ENST00000520755 IFT27Q9BW83 186 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 OPN3Q9H1Y3 402 aaPredicted RBP13.57□□□□□ -0.24
LSM1-203ENST00000520755 VCXQ9H320 206 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 VCX3BQ9H321 246 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 TXNIPQ9H3M7 391 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 PIGMQ9H3S5 423 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 KCNJ16Q9NPI9 418 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 ENOPH1Q9UHY7 261 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 PROCRQ9UNN8 238 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 NOX1Q9Y5S8 564 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 IER3IP1Q9Y5U9 82 aa13.57□□□□□ -0.24
LSM1-203ENST00000520755 USP9XQ93008 2570 aaPredicted RBP13.56□□□□□ -0.24
LSM1-203ENST00000520755 TEX13CA0A0J9YWL9 993 aa13.56□□□□□ -0.24
LSM1-203ENST00000520755 ZNF724A8MTY0 619 aa13.56□□□□□ -0.24
LSM1-203ENST00000520755 GPR171O14626 319 aa13.56□□□□□ -0.24
LSM1-203ENST00000520755 IMPA2O14732 288 aa13.56□□□□□ -0.24
LSM1-203ENST00000520755 ARPC3O15145 178 aa13.56□□□□□ -0.24
LSM1-203ENST00000520755 ZNF432O94892 652 aa13.56□□□□□ -0.24
LSM1-203ENST00000520755 TXNDC12O95881 172 aa13.56□□□□□ -0.24
LSM1-203ENST00000520755 APEHP13798 732 aaKnown RBP13.56□□□□□ -0.24
LSM1-203ENST00000520755 ZNF43P17038 809 aa13.56□□□□□ -0.24
LSM1-203ENST00000520755 CDH2P19022 906 aaPredicted RBP13.56□□□□□ -0.24
LSM1-203ENST00000520755 GIPRP48546 466 aa13.56□□□□□ -0.24
LSM1-203ENST00000520755 CLDN17P56750 224 aa13.56□□□□□ -0.24
LSM1-203ENST00000520755 ADARB1P78563 741 aaKnown RBP13.56□□□□□ -0.24
LSM1-203ENST00000520755 RUNX1T1Q06455 604 aa13.56□□□□□ -0.24
LSM1-203ENST00000520755 ZNF362Q5T0B9 420 aaPredicted RBP13.56□□□□□ -0.24
LSM1-203ENST00000520755 SLC27A4Q6P1M0 643 aa13.56□□□□□ -0.24
LSM1-203ENST00000520755 PTCHD4Q6ZW05 846 aa13.56□□□□□ -0.24
LSM1-203ENST00000520755 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms