RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 HMGB2P26583 209 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CALML3P27482 149 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 DCKP27707 260 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TEAD1P28347 426 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 GABRR2P28476 465 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 HSD11B1P28845 292 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 EPHA2P29317 976 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SSTR2P30874 369 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CHRNB4P30926 498 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CALCRP30988 508 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PRKAR2BP31323 418 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 FGF9P31371 208 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 FCGR2CP31995 323 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 GPR183P32249 361 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 HRH1P35367 487 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 MAS1LP35410 378 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SAA4P35542 130 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 HMGCLP35914 325 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 UGT2B10P36537 528 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ACVR1BP36896 505 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 DDOSTP39656 456 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 LEPP41159 167 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 AQP2P41181 271 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PPP1R2P41236 205 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ACTR1BP42025 376 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 RBM34P42696 430 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 NSG1P42857 185 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 MAGEA6P43360 314 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 KIR3DL2P43630 455 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CBX5P45973 191 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 XCR1P46094 333 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLCO1A2P46721 670 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 BRCC3P46736 316 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 YAP1P46937 504 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 RGRP47804 291 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR3A2P47893 321 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 QARSP47897 775 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CSNK1DP48730 415 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 IDH2P48735 452 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CDC34P49427 236 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMED10P49755 219 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPL14P50914 215 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ATP4BP51164 291 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 DAP3P51398 398 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SSR4P51571 173 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CCR8P51685 355 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 XKP51811 444 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 KPNA2P52292 529 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 NKX2-5P52952 324 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 LBX1P52954 281 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PLK1P53350 603 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CRYBA2P53672 197 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 AP2S1P53680 142 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PKNOX1P55347 436 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ATP5J2P56134 94 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 MLF1P58340 268 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 B3GALT5-AS1P59052 145 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 AP3S2P59780 193 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPL27P61353 136 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ATP6V0D1P61421 351 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 RND3P61587 244 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 STXBP1P61764 594 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPS15AP62244 130 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 POLR2GP62487 172 aaKnown RBP eCLIP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPL10AP62906 217 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC35B1P78383 322 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 MRPS25P82663 173 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPL24P83731 157 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 MS4A2Q01362 244 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 OC90Q02509 493 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TLE4Q04727 773 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 GLO1Q04760 184 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 BCL2L1Q07817 233 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SIGLEC14Q08ET2 396 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SCRN3Q0VDG4 424 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 Q0VFX4 171 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ST3GAL3Q11203 375 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TSPAN31Q12999 210 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRAF1Q13077 416 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PDIA2Q13087 525 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRAF3Q13114 568 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SELENBP1Q13228 472 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ITGB3BPQ13352 177 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 UNC119Q13432 240 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR5I1Q13606 314 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 VGLL4Q14135 290 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SERTAD2Q14140 314 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TFDP2Q14188 446 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 FASTKQ14296 549 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CAPRIN1Q14444 709 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 LAGE3Q14657 143 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 EMC2Q15006 297 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRAM2Q15035 370 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 OXA1LQ15070 435 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PSG5Q15238 335 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SF3A2Q15428 464 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TEAD2Q15562 447 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNHIT3Q15649 155 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TSC22D1Q15714 1073 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TAB1Q15750 504 aa0.49□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms