RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 OR12D1P0DN82 309 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 TFPIP10646 304 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 MLF1P58340 268 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 EBPQ15125 230 aaKnown RBP7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 ODF4Q2M2E3 257 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 FAM74A3Q4VXF1 159 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 OPN5Q6U736 354 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 C16orf89Q6UX73 402 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 TDRPQ86YL5 185 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 ARHGEF39Q8N4T4 335 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 SVOPQ8N4V2 548 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNF511Q8NB15 262 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 OR4D6Q8NGJ1 314 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 STOML3Q8TAV4 291 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 FOXRED1Q96CU9 486 aaPredicted RBP7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 PPP3R2Q96LZ3 170 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 NSMCE2Q96MF7 247 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 SFXN2Q96NB2 322 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 NODALQ96S42 347 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 INPP5KQ9BT40 448 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 BHLHE41Q9C0J9 482 aaPredicted RBP7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 DSN1Q9H410 356 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 GFOD1Q9NXC2 390 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 UBQLN2Q9UHD9 624 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 FBXL2Q9UKC9 423 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 A0A0A6YYJ9 748 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 KDM4EB2RXH2 506 aaPredicted RBP7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 ICOSLGO75144 302 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 SLC35E2P0CK97 266 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNF14P17017 642 aaPredicted RBP7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 FAM74A1Q5RGS3 127 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 C9orf135Q5VTT2 229 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 LINGO2Q7L985 606 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 RRM2BQ7LG56 351 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNF383Q8NA42 475 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 MAL2Q969L2 176 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 SPACA9Q96E40 222 aaPredicted RBP7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 TRIB1Q96RU8 372 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 LYRM4Q9HD34 91 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 SNTG1Q9NSN8 517 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 PPP4R1LQ9P1A2 415 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNF639Q9UID6 485 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 GNG8Q9UK08 70 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 RAP2CQ9Y3L5 183 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 PCNX3Q9H6A9 2034 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 PCSK5Q92824 1860 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 A0A096LPI6 279 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 FAM234BA2RU67 622 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 DISC1C4P0D8 188 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 PDCD5O14737 125 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 SCN2BO60939 215 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 NCR1O76036 304 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 HCKP08631 526 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 TUBG1P23258 451 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 MYL9P24844 172 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 ELK4P28324 431 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 KIR3DL1P43629 444 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 SLC37A1P57057 533 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 TSPAN5P62079 268 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 HBA1P69905 142 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 GRK1Q15835 563 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 UGT3A2Q3SY77 523 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 Q6ZS92 163 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 PLCZ1Q86YW0 608 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 ZDHHC13Q8IUH4 622 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 DNAJA4Q8WW22 397 aaPredicted RBP7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 ZBED6CLQ96FA7 236 aaPredicted RBP7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 ST6GAL2Q96JF0 529 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 TSNAXQ99598 290 aaKnown RBP7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 Q9N2J8 555 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 MMP25Q9NPA2 562 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 TUBG2Q9NRH3 451 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 PRODH2Q9UF12 536 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 LEF1Q9UJU2 399 aaPredicted RBP7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 FREM1Q5H8C1 2179 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 UPK1AO00322 258 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 TP53I11O14683 189 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 TPST2O60704 377 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 LGI1O95970 557 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 INHBBP09529 407 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 CPOXP36551 454 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 ETV4P43268 484 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 MAN2A2P49641 1150 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 SLC10A1Q14973 349 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 ZBTB37Q5TC79 503 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 TRILQ7L0X0 811 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 TMEM251Q8N6I4 163 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 OR1M1Q8NGA1 313 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 OR1J4Q8NGS1 313 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 OR4C3Q8NH37 302 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 MOSPD2Q8NHP6 518 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 STK35Q8TDR2 534 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 ELP5Q8TE02 316 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 PHYHIPQ92561 330 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 HAS2Q92819 552 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 THUMPD3Q9BV44 507 aaKnown RBP7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 ADI1Q9BV57 179 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 PRR14Q9BWN1 585 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 TTTY12Q9BZ98 90 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 SIRT7Q9NRC8 400 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms