RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 SMIM24O75264 130 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 SUPT3HO75486 399 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 REM1O75628 298 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 PPP1R3DO95685 299 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 TGM6O95932 706 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 CH25HO95992 272 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 AK1P00568 194 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 ERCC1P07992 297 aaPredicted RBP3.38□□□□□ -1.87
USP54-217ENST00000498213 SNRNP70P08621 437 aaKnown RBP3.38□□□□□ -1.87
USP54-217ENST00000498213 NUDT17P0C025 328 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 CTAGE8P0CG41 777 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 CT45A8P0DMV1 189 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 CT45A9P0DMV2 189 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 GFAPP14136 432 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 ZNF12P17014 697 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 TSPAN8P19075 237 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 MYF6P23409 242 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 SLCO1A2P46721 670 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 SERPINB8P50452 374 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 ZNF41P51814 821 aaPredicted RBP3.38□□□□□ -1.87
USP54-217ENST00000498213 CCNG1P51959 295 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 PKNOX1P55347 436 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 B3GALT5-AS1P59052 145 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 PON3Q15166 354 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 RASA2Q15283 850 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 TRIP13Q15645 432 aaPredicted RBP3.38□□□□□ -1.87
USP54-217ENST00000498213 SGCBQ16585 318 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 KRTAP27-1Q3LI81 207 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 ZNF718Q3SXZ3 478 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 ZNF672Q499Z4 452 aaPredicted RBP3.38□□□□□ -1.87
USP54-217ENST00000498213 CT45A2Q5DJT8 189 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 NCMAPQ5T1S8 102 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 CPTPQ5TA50 214 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 GFI1BQ5VTD9 330 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 RAET1LQ5VY80 246 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 C18orf63Q68DL7 685 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 TTC19Q6DKK2 380 aaPredicted RBP3.38□□□□□ -1.87
USP54-217ENST00000498213 KRTAP5-1Q6L8H4 278 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 KLHL24Q6TFL4 600 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 STAC2Q6ZMT1 411 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 Q6ZT83 130 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 COMMD6Q7Z4G1 85 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 YRDCQ86U90 279 aaKnown RBP3.38□□□□□ -1.87
USP54-217ENST00000498213 CTAGE6Q86UF2 777 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 SLC22A9Q8IVM8 553 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 CTAGE4Q8IX94 777 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 KLHL7Q8IXQ5 586 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 ZBED8Q8IZ13 594 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 GABRG1Q8N1C3 465 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 SVOPLQ8N434 492 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 TEX9Q8N6V9 391 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 CNEP1R1Q8N9A8 125 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 CDRT4Q8N9R6 151 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 ZBTB8BQ8NAP8 495 aaPredicted RBP3.38□□□□□ -1.87
USP54-217ENST00000498213 OR2M3Q8NG83 312 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 OR52B6Q8NGF0 335 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 OR52R1Q8NGF1 315 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 RNF128Q8TEB7 428 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 SLC44A1Q8WWI5 657 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 ATP6V1E2Q96A05 226 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 PPWD1Q96BP3 646 aaKnown RBP3.38□□□□□ -1.87
USP54-217ENST00000498213 MOAP1Q96BY2 351 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 KLHL29Q96CT2 875 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 MTERF3Q96E29 417 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 NODALQ96S42 347 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 STACQ99469 402 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 MTERF1Q99551 399 aaKnown RBP3.38□□□□□ -1.87
USP54-217ENST00000498213 CCT7Q99832 543 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 DHRS9Q9BPW9 319 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 ERP44Q9BS26 406 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 PINK1Q9BXM7 581 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 PARD6BQ9BYG5 372 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 PRRG4Q9BZD6 226 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 TBL1XR1Q9BZK7 514 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 ACTR6Q9GZN1 396 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 OR51B5Q9H339 312 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 ALG9Q9H6U8 611 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 LIN28AQ9H9Z2 209 aaKnown RBP3.38□□□□□ -1.87
USP54-217ENST00000498213 PPCSQ9HAB8 311 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 ZNF556Q9HAH1 456 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 SLC35C2Q9NQQ7 365 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 UBQLN4Q9NRR5 601 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 ACSS1Q9NUB1 689 aaPredicted RBP3.38□□□□□ -1.87
USP54-217ENST00000498213 EMC3Q9P0I2 261 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 SENP1Q9P0U3 644 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 MDFICQ9P1T7 246 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 NLKQ9UBE8 527 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 BCAP29Q9UHQ4 241 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 IKZF3Q9UKT9 509 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 CHMP2BQ9UQN3 213 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 PLLPQ9Y342 182 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 UTP11Q9Y3A2 253 aaKnown RBP3.38□□□□□ -1.87
USP54-217ENST00000498213 TMED5Q9Y3A6 229 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 OR10H1Q9Y4A9 318 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 PSAT1Q9Y617 370 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 FKBP7Q9Y680 259 aa3.38□□□□□ -1.87
USP54-217ENST00000498213 SCN3AQ9NY46 2000 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 RAI1Q7Z5J4 1906 aaPredicted RBP3.37□□□□□ -1.87
USP54-217ENST00000498213 IGLV5-37A0A075B6J1 123 aa3.37□□□□□ -1.87
USP54-217ENST00000498213 IGKV3D-15A0A087WSY6 115 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms