RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 NR2C2APQ86WQ0 139 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 Q8N402 240 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 ASCC1Q8N9N2 400 aaKnown RBP10.99□□□□□ -0.65
HDAC6-230ENST00000488543 CYB561A3Q8NBI2 242 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 OR51G2Q8NGK0 314 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 LILRB4Q8NHJ6 448 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 ENKURQ8TC29 256 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 TAAR8Q969N4 342 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 RASL10BQ96S79 203 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 JAM3Q9BX67 310 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 GPR87Q9BY21 358 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 NRIP3Q9NQ35 241 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 TAS2R10Q9NYW0 307 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 NLKQ9UBE8 527 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 ADAM18Q9Y3Q7 739 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 GRIP1Q9Y3R0 1128 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 SIRT4Q9Y6E7 314 aaPredicted RBP10.99□□□□□ -0.65
HDAC6-230ENST00000488543 ALPK2Q86TB3 2170 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 TMEM72A0PK05 275 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 ANKUB1A6NFN9 424 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 C21orf140B9A014 251 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 PRR23D1E9PI22 279 aaPredicted RBP10.98□□□□□ -0.65
HDAC6-230ENST00000488543 RGS13O14921 159 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 ITGA10O75578 1167 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 NUDT14O95848 222 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 CD63P08962 238 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 PRR23D2P0DMB1 279 aaPredicted RBP10.98□□□□□ -0.65
HDAC6-230ENST00000488543 CLUP10909 449 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 HIST1H1CP16403 213 aaKnown RBP10.98□□□□□ -0.65
HDAC6-230ENST00000488543 UQCRC1P31930 480 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 ATP6V1E1P36543 226 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 DDOSTP39656 456 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 AQP2P41181 271 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 POLR2HP52434 150 aaKnown RBP10.98□□□□□ -0.65
HDAC6-230ENST00000488543 SNRPD2P62316 118 aaKnown RBP10.98□□□□□ -0.65
HDAC6-230ENST00000488543 CAMK2BQ13554 666 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 C1QL3Q5VWW1 255 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 B3GNTL1Q67FW5 361 aaPredicted RBP10.98□□□□□ -0.65
HDAC6-230ENST00000488543 ADGRG3Q86Y34 549 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 OR10G3Q8NGC4 313 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 SLC22A8Q8TCC7 542 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 SECISBP2Q96T21 854 aaKnown RBP10.98□□□□□ -0.65
HDAC6-230ENST00000488543 DDOQ99489 341 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 NPAS1Q99742 590 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 ATF6BQ99941 703 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 ARHGAP9Q9BRR9 750 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 RNF32Q9H0A6 362 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 PPIL3Q9H2H8 161 aaKnown RBP10.98□□□□□ -0.65
HDAC6-230ENST00000488543 CDCP1Q9H5V8 836 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 RNF121Q9H920 327 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 H2AFY2Q9P0M6 372 aaPredicted RBP10.98□□□□□ -0.65
HDAC6-230ENST00000488543 ITGB1BP2Q9UKP3 347 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 MED13Q9UHV7 2174 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 CACNA1CQ13936 2221 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 EML6Q6ZMW3 1958 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 TMED7-TICAM2A0A0A6YYA0 188 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 HMX3A6NHT5 357 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 GABRPO00591 440 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 ARPC3O15145 178 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 NPIPB7O75200 414 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 BPNT1O95861 308 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 SLC2A2P11168 524 aaPredicted RBP10.98□□□□□ -0.65
HDAC6-230ENST00000488543 ZNF3P17036 446 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 CXCR1P25024 350 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 DLX5P56178 289 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 C17orf67Q0P5P2 114 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 TPBGQ13641 420 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 CDK10Q15131 360 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 EXT1Q16394 746 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 NTRK2Q16620 822 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 RNASE12Q5GAN4 147 aaKnown RBP10.98□□□□□ -0.65
HDAC6-230ENST00000488543 POMZP3Q6PJE2 187 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 GRINAQ7Z429 371 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 C10orf53Q8N6V4 93 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 OR52E2Q8NGJ4 325 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 M1APQ8TC57 530 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 PTDSS2Q9BVG9 487 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 ANKRD10Q9NXR5 420 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 TMED7Q9Y3B3 224 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 ALG5Q9Y673 324 aa10.98□□□□□ -0.65
HDAC6-230ENST00000488543 CEP295Q9C0D2 2601 aa10.97□□□□□ -0.65
HDAC6-230ENST00000488543 MGAQ8IWI9 3026 aa10.97□□□□□ -0.65
HDAC6-230ENST00000488543 IFNGP01579 166 aa10.97□□□□□ -0.65
HDAC6-230ENST00000488543 IGHEP01854 428 aa10.97□□□□□ -0.65
HDAC6-230ENST00000488543 MRPL3P09001 348 aaKnown RBP10.97□□□□□ -0.65
HDAC6-230ENST00000488543 S100A1P23297 94 aa10.97□□□□□ -0.65
HDAC6-230ENST00000488543 GABRA5P31644 462 aa10.97□□□□□ -0.65
HDAC6-230ENST00000488543 SUMO3P55854 103 aaPredicted RBP10.97□□□□□ -0.65
HDAC6-230ENST00000488543 ERVK-25P63136 954 aa10.97□□□□□ -0.65
HDAC6-230ENST00000488543 TATDN3Q17R31 274 aa10.97□□□□□ -0.65
HDAC6-230ENST00000488543 RDH10Q8IZV5 341 aa10.97□□□□□ -0.65
HDAC6-230ENST00000488543 GHDCQ8N2G8 530 aa10.97□□□□□ -0.65
HDAC6-230ENST00000488543 TMEM99Q8N816 258 aa10.97□□□□□ -0.65
HDAC6-230ENST00000488543 SDR9C7Q8NEX9 313 aa10.97□□□□□ -0.65
HDAC6-230ENST00000488543 OR4K13Q8NH42 304 aa10.97□□□□□ -0.65
HDAC6-230ENST00000488543 NEIL3Q8TAT5 605 aa10.97□□□□□ -0.65
HDAC6-230ENST00000488543 UPRTQ96BW1 309 aa10.97□□□□□ -0.65
HDAC6-230ENST00000488543 SPACA9Q96E40 222 aaPredicted RBP10.97□□□□□ -0.65
HDAC6-230ENST00000488543 FRMD6Q96NE9 622 aa10.97□□□□□ -0.65
HDAC6-230ENST00000488543 TEAD3Q99594 435 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms