RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 ACTA1P68133 377 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 ACSM1Q08AH1 577 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 SELENBP1Q13228 472 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 TIMM50Q3ZCQ8 353 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 ZNF766Q5HY98 468 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 ADCK1Q86TW2 530 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 GTPBP8Q8N3Z3 284 aaPredicted RBP12.74□□□□□ -0.37
CUX1-209ENST00000487284 ARIH2OSQ8N7S6 290 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 OR2M7Q8NG81 312 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 OR1J4Q8NGS1 313 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 SLC39A7Q92504 469 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 SCMH1Q96GD3 660 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 C5orf34Q96MH7 638 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 GNRHR2Q96P88 292 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 SNX18Q96RF0 628 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 TXNIPQ9H3M7 391 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 ALKBH4Q9NXW9 302 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 ZNF346Q9UL40 294 aaKnown RBP12.74□□□□□ -0.37
CUX1-209ENST00000487284 KLF13Q9Y2Y9 288 aaPredicted RBP12.74□□□□□ -0.37
CUX1-209ENST00000487284 CAB39Q9Y376 341 aaPredicted RBP12.74□□□□□ -0.37
CUX1-209ENST00000487284 PRRC2CQ9Y520 2896 aaKnown RBP12.74□□□□□ -0.37
CUX1-209ENST00000487284 NPIPB13A6NJU9 1138 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 LRRC3CA6NJW4 275 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 NPIPB4C9JG80 1138 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 C11orf98E9PRG8 122 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 RNF13O43567 381 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 OR6A2O95222 327 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 ITGB2P05107 769 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 TFPIP10646 304 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 DPP4P27487 766 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 CLK1P49759 484 aaKnown RBP12.73□□□□□ -0.37
CUX1-209ENST00000487284 DSCR4P56555 118 aaPredicted RBP12.73□□□□□ -0.37
CUX1-209ENST00000487284 LSM3P62310 102 aaKnown RBP12.73□□□□□ -0.37
CUX1-209ENST00000487284 FOXK1P85037 733 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 TPBGQ13641 420 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 PON3Q15166 354 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 OR7A5Q15622 319 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 LINC01590Q5TEZ4 76 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 ZNF322Q6U7Q0 402 aaPredicted RBP12.73□□□□□ -0.37
CUX1-209ENST00000487284 IGFL3Q6UXB1 125 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 SULF2Q8IWU5 870 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 PHC2Q8IXK0 858 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 ZNF519Q8TB69 540 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 NDNFQ8TB73 568 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 ZFAND2BQ8WV99 257 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 SMPDL3BQ92485 455 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 ABHD17AQ96GS6 310 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 TIMP4Q99727 224 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 FAM173AQ9BQD7 235 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 OR51E2Q9H255 320 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 CHST11Q9NPF2 352 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 FANCFQ9NPI8 374 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 ZMIZ1Q9ULJ6 1067 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 MOKQ9UQ07 419 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 DAPL1A0PJW8 107 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 H3BML4 177 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 SERPINI2O75830 405 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 GLCEO94923 617 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 RENP00797 406 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 MRPL3P09001 348 aaKnown RBP12.73□□□□□ -0.37
CUX1-209ENST00000487284 ZNF17P17021 662 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 GTF2E2P29084 291 aaKnown RBP12.73□□□□□ -0.37
CUX1-209ENST00000487284 UGT2B10P36537 528 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 RFC3P40938 356 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 RPL27P61353 136 aaKnown RBP12.73□□□□□ -0.37
CUX1-209ENST00000487284 PUDPQ08623 228 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 FOXO1Q12778 655 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 MYBPHQ13203 477 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 GALEQ14376 348 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 ACKR1Q16570 336 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 H1FNTQ75WM6 255 aaPredicted RBP12.73□□□□□ -0.37
CUX1-209ENST00000487284 ZADH2Q8N4Q0 377 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 TMEM178AQ8NBL3 297 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 ADPRHL1Q8NDY3 354 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 ATP6V1C2Q8NEY4 427 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 OR10H4Q8NGA5 316 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 DYNC2LI1Q8TCX1 351 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 ZNRF4Q8WWF5 429 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 GATAD2BQ8WXI9 593 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 ZMYND19Q96E35 227 aaPredicted RBP12.73□□□□□ -0.37
CUX1-209ENST00000487284 CNN2Q99439 309 aaKnown RBP12.73□□□□□ -0.37
CUX1-209ENST00000487284 ALG8Q9BVK2 526 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 RPRD1BQ9NQG5 326 aaKnown RBP12.73□□□□□ -0.37
CUX1-209ENST00000487284 B3GALT5Q9Y2C3 310 aa12.73□□□□□ -0.37
CUX1-209ENST00000487284 MED12Q93074 2177 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 USP24Q9UPU5 2620 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 ALPK2Q86TB3 2170 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 TRAV17A0A0B4J275 112 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 MS4A18H0YCH9 400 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 AKAP8O43823 692 aaKnown RBP12.72□□□□□ -0.37
CUX1-209ENST00000487284 CBR3O75828 277 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 LALBAP00709 142 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 TFP02787 698 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 RFPL3SP0C7P2 107 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 TCEA1P23193 301 aaKnown RBP12.72□□□□□ -0.37
CUX1-209ENST00000487284 AHCYP23526 432 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 MEOX1P50221 254 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 BDH1Q02338 343 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 ZNF85Q03923 595 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 MS4A18Q3C1V0 323 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms