RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 A0A1W2PRG6 482 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 A0A1W2PRQ8 180 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 MCIDASD6RGH6 385 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 SEC14L2O76054 403 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 STAMBPO95630 424 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 BCL10O95999 233 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 PLAUP00749 431 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 CD3EP07766 207 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 CSNK1A1P48729 337 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 ARF1P84077 181 aaKnown RBP12.94□□□□□ -0.34
USP4-212ENST00000486549 BSPH1Q075Z2 132 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 DGCR6Q14129 220 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 LAPTM4AQ15012 233 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 TBRG1Q3YBR2 411 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 MTX3Q5HYI7 312 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 NCMAPQ5T1S8 102 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 LCN8Q6JVE9 175 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 ZNF704Q6ZNC4 412 aaPredicted RBP12.94□□□□□ -0.34
USP4-212ENST00000486549 ZDHHC21Q8IVQ6 265 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 C20orf196Q8IYI0 205 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 CDK20Q8IZL9 346 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 RNF113BQ8IZP6 322 aaKnown RBP12.94□□□□□ -0.34
USP4-212ENST00000486549 C17orf78Q8N4C9 275 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 WDR31Q8NA23 367 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 OR13C2Q8NGS9 318 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 OR51A7Q8NH64 312 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 LIPHQ8WWY8 451 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 ZNF837Q96EG3 531 aaPredicted RBP12.94□□□□□ -0.34
USP4-212ENST00000486549 FAM46AQ96IP4 442 aaKnown RBP12.94□□□□□ -0.34
USP4-212ENST00000486549 LRGUKQ96M69 825 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 ADAD1Q96M93 576 aaKnown RBP12.94□□□□□ -0.34
USP4-212ENST00000486549 ULBP2Q9BZM5 246 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 B3GAT2Q9NPZ5 323 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 AMDHD2Q9Y303 409 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 TCRBV5S2A0A599 114 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 HTR3EA5X5Y0 456 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 DPRXA6NFQ7 191 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 RPL36A-HNRNPH2H7BZ11 118 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 M0R1B8 84 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 GADD45GO95257 159 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 IST1P53990 364 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 SH3BGRP55822 239 aaPredicted RBP12.93□□□□□ -0.34
USP4-212ENST00000486549 TUBA1BP68363 451 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 TUBA4AP68366 448 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 TOP3AQ13472 1001 aaPredicted RBP12.93□□□□□ -0.34
USP4-212ENST00000486549 SEC23BQ15437 767 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 IQCCQ4KMZ1 466 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 ALG10Q5BKT4 473 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 PAMR1Q6UXH9 720 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 TUBA1AQ71U36 451 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 OAFQ86UD1 273 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 IGFN1Q86VF2 1251 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 OR6X1Q8NH79 312 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 ZNF566Q969W8 418 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 SLC7A6OSQ96CW6 309 aaPredicted RBP12.93□□□□□ -0.34
USP4-212ENST00000486549 ASB9Q96DX5 294 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 BTBD10Q9BSF8 475 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 IL1RAPQ9NPH3 570 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 TMEM5Q9Y2B1 443 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 HIF3AQ9Y2N7 669 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 RNF115Q9Y4L5 304 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 ROS1P08922 2347 aa12.93□□□□□ -0.34
USP4-212ENST00000486549 CDC42EP2O14613 210 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 WNT11O96014 354 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 RRM2P31350 389 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 CAPZA2P47755 286 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 DAP3P51398 398 aaKnown RBP12.92□□□□□ -0.34
USP4-212ENST00000486549 RIPPLY3P57055 190 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 CLRN1P58418 232 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 SMIM11AP58511 58 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 PRPS1P60891 318 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 UBE2NP61088 152 aaKnown RBP12.92□□□□□ -0.34
USP4-212ENST00000486549 RPS4XP62701 263 aaKnown RBP12.92□□□□□ -0.34
USP4-212ENST00000486549 KEAP1Q14145 624 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 ACKR1Q16570 336 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 ADAM5Q6NVV9 412 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 ANKRD16Q6P6B7 361 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 KLHL17Q6TDP4 642 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 SSX8Q7RTT4 187 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 KBTBD8Q8NFY9 601 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 OR4K5Q8NGD3 323 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 ASB10Q8WXI3 467 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 BCL2L2Q92843 193 aaPredicted RBP12.92□□□□□ -0.34
USP4-212ENST00000486549 MBD6Q96DN6 1003 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 SLC25A44Q96H78 314 aaPredicted RBP12.92□□□□□ -0.34
USP4-212ENST00000486549 LRR1Q96L50 414 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 DHRS1Q96LJ7 313 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 TNFRSF13CQ96RJ3 184 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 ZNF347Q96SE7 839 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 NELFAQ9H3P2 528 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 KRCC1Q9NPI7 259 aaPredicted RBP12.92□□□□□ -0.34
USP4-212ENST00000486549 CCM2LQ9NUG4 571 aaPredicted RBP12.92□□□□□ -0.34
USP4-212ENST00000486549 AURKCQ9UQB9 309 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 POFUT2Q9Y2G5 429 aa12.92□□□□□ -0.34
USP4-212ENST00000486549 RAI1Q7Z5J4 1906 aaPredicted RBP12.92□□□□□ -0.34
USP4-212ENST00000486549 CADP27708 2225 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 ZNF99A8MXY4 864 aaPredicted RBP12.91□□□□□ -0.34
USP4-212ENST00000486549 ABCD4O14678 606 aa12.91□□□□□ -0.34
USP4-212ENST00000486549 DNAJC8O75937 253 aaPredicted RBP12.91□□□□□ -0.34
USP4-212ENST00000486549 IGHG1P01857 330 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms