RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 TIMM23BQ5SRD1 257 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 STAC2Q6ZMT1 411 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 RINLQ6ZS11 566 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 SLC35D2Q76EJ3 337 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 PXKQ7Z7A4 578 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 JAZF1Q86VZ6 243 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 NKAIN4Q8IVV8 208 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 NRMQ8IXM6 262 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 RNF113BQ8IZP6 322 aaKnown RBP7.1□□□□□ -1.27
USP40-216ENST00000485943 OFCC1Q8IZS5 231 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 ADPRHL1Q8NDY3 354 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 OR52L1Q8NGH7 329 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 PFN4Q8NHR9 129 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 ACOT11Q8WXI4 607 aaPredicted RBP7.1□□□□□ -1.27
USP40-216ENST00000485943 TMEM45BQ96B21 275 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 ZNF524Q96C55 264 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 ZNF385AQ96PM9 386 aaKnown RBP7.1□□□□□ -1.27
USP40-216ENST00000485943 RBP7Q96R05 134 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 BTBD10Q9BSF8 475 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 TEX12Q9BXU0 123 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 TMPRSS13Q9BYE2 586 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 AMBRA1Q9C0C7 1298 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 PCDHAC1Q9H158 963 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 C1orf21Q9H246 121 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 ANKRD19PQ9H560 264 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 REEP1Q9H902 201 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 ACTR3BQ9P1U1 418 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 KIF17Q9P2E2 1029 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 GRHPRQ9UBQ7 328 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 MGAT4BQ9UQ53 548 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 CHST2Q9Y4C5 530 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 HEATR1Q9H583 2144 aaKnown RBP7.09□□□□□ -1.27
USP40-216ENST00000485943 USP9YO00507 2555 aaPredicted RBP7.09□□□□□ -1.27
USP40-216ENST00000485943 A6NIZ1 184 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 LRRN3E7EW58 273 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 FAM229AH3BQW9 127 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 EBAG9O00559 213 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 PLPP3O14495 311 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 TMPRSS2O15393 492 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 RAMP1O60894 148 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 GCM2O75603 506 aaPredicted RBP7.09□□□□□ -1.27
USP40-216ENST00000485943 DNAJC8O75937 253 aaPredicted RBP7.09□□□□□ -1.27
USP40-216ENST00000485943 DIRAS1O95057 198 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 CGAP01215 116 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 BGLAPP02818 100 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 F13BP05160 661 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 CD79AP11912 226 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 IFNGR1P15260 489 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 KLK2P20151 261 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 CRYGSP22914 178 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 IGHV1-2P23083 117 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 NTF4P34130 210 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 GPR4P46093 362 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 SLC9A3P48764 834 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 PCYT1AP49585 367 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 ZNF83P51522 516 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 UGT2B15P54855 530 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 RAP1BP61224 184 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 RAP1AP62834 184 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 H3F3AP84243 136 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 GALK2Q01415 458 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 EGR4Q05215 589 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 NPRL3Q12980 569 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 TRIM25Q14258 630 aaKnown RBP7.09□□□□□ -1.27
USP40-216ENST00000485943 MELKQ14680 651 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 ANKDD1AQ495B1 522 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 TSPO2Q5TGU0 170 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 C1orf146Q5VVC0 180 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 ZNF813Q6ZN06 617 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 COMTD1Q86VU5 262 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 CDC20BQ86Y33 519 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 CCDC36Q8IYA8 594 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 GABRG1Q8N1C3 465 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 C17orf78Q8N4C9 275 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 LINC00471Q8N535 108 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 C1orf162Q8NEQ5 155 aaPredicted RBP7.09□□□□□ -1.27
USP40-216ENST00000485943 OR4D11Q8NGI4 311 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 OR51A7Q8NH64 312 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 FNDC8Q8TC99 324 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 TMEM171Q8WVE6 324 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 ASB9Q96DX5 294 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 LURAP1Q96LR2 239 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 MOGAT1Q96PD6 335 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 CCL19Q99731 98 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 EMC6Q9BV81 110 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 PTDSS2Q9BVG9 487 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 C1QTNF6Q9BXI9 259 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 RERGLQ9H628 205 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 ZNF556Q9HAH1 456 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 CRLF2Q9HC73 371 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 CCNB1IP1Q9NPC3 277 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 OBP2BQ9NPH6 170 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 RASSF1Q9NS23 344 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 SLC7A10Q9NS82 523 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 MED29Q9NX70 200 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 MALT1Q9UDY8 824 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 POLR1DQ9Y2S0 133 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 RNF115Q9Y4L5 304 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 SPEF1Q9Y4P9 236 aa7.09□□□□□ -1.27
USP40-216ENST00000485943 HECTD1Q9ULT8 2610 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms